YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21647290, gi\|...
Organism:	Chlorobium tepidum TLS
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21647290, gi|....

Description	E-value	Query Range	Subject Range
gi\|48855976 - gi\|48855976\|ref\|ZP_00310134.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|110636965, gi... - gi\|110636965\|ref\|YP_677172.1\| hypothetical protein CHU_0545 [Cytophaga hutchinsonii ATCC 33406], gi\|...	183.0	[0..50]	[162..62]
gi\|21646189, gi\|... - gi\|21673115\|ref\|NP_661180.1\| hypothetical protein CT0276 [Chlorobium tepidum TLS], gi\|21646189\|gb\|AA...	154.0	[0..70]	[170..34]
gi\|78167499, gi\|... - gi\|78187597\|ref\|YP_375640.1\| hypothetical protein Plut_1743 [Pelodictyon luteolum DSM 273], gi\|78167...	102.0	[0..70]	[167..73]
gi\|189345880, gi... - gi\|67918834\|ref\|ZP_00512426.1\| conserved hypothetical protein [Chlorobium limicola DSM 245], gi\|6778...	100.0	[0..56]	[169..38]
gi\|145220328, gi... - gi\|71482411\|ref\|ZP_00662103.1\| conserved hypothetical protein [Prosthecochloris vibrioformis DSM 265...	99.0	[0..70]	[168..57]
gi\|110598883, gi... - gi\|110598883\|ref\|ZP_01387134.1\| hypothetical protein CferDRAFT_0040 [Chlorobium ferrooxidans DSM 130...	99.0	[0..51]	[168..38]
gi\|68551916, gi\|... - gi\|68551916\|ref\|ZP_00591309.1\| conserved hypothetical protein [Prosthecochloris aestuarii DSM 271], ...	96.0	[0..62]	[162..51]
gi\|67774058, gi\|... - gi\|67937002\|ref\|ZP_00529989.1\| hypothetical protein Cpha266DRAFT_0369 [Chlorobium phaeobacteroides D...	92.0	[0..58]	[167..46]
gi\|78188448, gi\|... - gi\|78188448\|ref\|YP_378786.1\| hypothetical protein Cag_0470 [Chlorobium chlorochromatii CaD3], gi\|781...	87.0	[0..70]	[170..58]
gi\|68243453, gi\|... - gi\|68549681\|ref\|ZP_00589142.1\| conserved hypothetical protein [Pelodictyon phaeoclathratiforme BU-1]...	83.0	[0..62]	[169..48]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKLVMTAL VAGLLGSAGT VFAASSNDQP APCARPGISG PVDARGYGMG PEARFARQQD  60
   61 MRWQRMKQAL GLSDSQEQKM MELRRGFYQE SRPVRQSMRN LQRDLALESV KKSPDGRKIA 120
  121 NLTQRIGQQS VRLAQLESRH LRELAKVLDA RQIDRLLQMR DNFGGKRWGR G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.908	a.24.1	Apolipoprotein
View	Download	0.832	a.47.2	t-snare proteins
View	Download	0.780	a.24.1	Apolipoprotein
View	Download	0.754	a.7.1	Spectrin repeat
View	Download	0.738	a.7.1	Spectrin repeat

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits