YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21674123, gi\|...
Organism:	Chlorobium tepidum TLS
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21674123, gi|....

Description	E-value	Query Range	Subject Range
YA83_METJA, Y108... - (Q58483) Hypothetical protein MJ1083, Uncharacterized protein MJ1083 - Methanococcus jannaschii, Iro... ISF2_METJA - Iron-sulfur flavoprotein MJ1083 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL...	170.0	[0..1]	[191..1]
gi\|68552141, gi\|... - gi\|68552141\|ref\|ZP_00591533.1\| NADPH-dependent FMN reductase [Prosthecochloris aestuarii DSM 271], g...	166.0	[0..1]	[191..1]
gi\|193085865, gi... - gi\|193212388\|ref\|YP_001998341.1\| NADPH-dependent FMN reductase [Chlorobaculum parvum NCIB 8327], gi\|... gi\|2661851, gi\|7... - pir\|\|T17189 conserved hypothetical protein CAB06296 - Chlorobium vibrioforme, gi\|2661851\|emb\|CAB0629...	166.0	[0..1]	[191..1]
gi\|20090828, gi\|... - gi\|20090828\|ref\|NP_616903.1\| iron-sulfur flavoprotein [Methanosarcina acetivorans C2A], gi\|19915896\|...	166.0	[0..1]	[191..1]
gi\|44921232, gi\|... - gi\|45358474\|ref\|NP_988031.1\| iron-sulfur flavoprotein [Methanococcus maripaludis S2], gi\|44921232\|em...	165.0	[0..1]	[191..1]
gi\|72396073, gi\|... - gi\|73668911\|ref\|YP_304926.1\| iron-sulfur flavoprotein [Methanosarcina barkeri str. Fusaro], gi\|72396...	163.0	[0..1]	[191..1]
gi\|67914758, gi\|... - gi\|67941516\|ref\|ZP_00533631.1\| NADPH-dependent FMN reductase [Chlorobium phaeobacteroides BS1], gi\|6...	162.0	[0..1]	[192..1]
gi\|251946646, gi... - gi\|253565181\|ref\|ZP_04842637.1\| iron-sulfur flavoprotein [Bacteroides sp. 3_2_5], gi\|251946646\|gb\|EE... gi\|60494121, gi\|... - gi\|60682687\|ref\|YP_212831.1\| putative flavoprotein [Bacteroides fragilis NCTC 9343], gi\|60494121\|emb... gi\|53714676, gi\|... - gi\|53714676\|ref\|YP_100668.1\| iron-sulfur flavoprotein [Bacteroides fragilis YCH46], gi\|52217541\|dbj\|...	162.0	[0..1]	[192..1]
gi\|88189238, gi\|... - gi\|88603776\|ref\|YP_503954.1\| NADPH-dependent FMN reductase [Methanospirillum hungatei JF-1], gi\|8818...	162.0	[0..1]	[190..1]
gi\|77544791, gi\|... - gi\|77918708\|ref\|YP_356523.1\| putative NADPH-dependent FMN reductase [Pelobacter carbinolicus DSM 238...	160.0	[0..1]	[190..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVIGINGSP RRAGNTSIML KTIFEVLEDE GIETELIQVG GTNIKGCRAC YACIKNKNSE  60
   61 CSTKGDGFNE IFAKMVEADG MILGSPTYFA DITPELKALI DRAGFVSRTN GQLFRHKVGA 120
  121 SVVSLRRGGG IHAYDSINHL FQICQMFMVG STYWNLGFGG RDGGEVVNDT EGMENMRDLG 180
  181 HSMAFLLKKL HN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	2a5lA
Description:	The crystal structure of the Trp repressor binding protein WrbA from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.275631658558537	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: