YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21647223, gi\|...
Organism:	Chlorobium tepidum TLS
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21647223, gi|....

Description	E-value	Query Range	Subject Range
gi\|809733\|emb\|CA... - vhcD [Methanococcus voltae] VHCD_METVO - F420-non-reducing hydrogenase vhc iron-sulfur subunit D OS=Methanococcus voltae GN=vhcD PE=2 SV=1	252.0	[0..1]	[144..1]
gi\|44921142, gi\|... - gi\|45358384\|ref\|NP_987941.1\| coenzyme F420-non-reducing hydrogenase subunit delta [Methanococcus mar...	244.0	[0..1]	[140..1]
gi\|19886596, gi\|... - gi\|20093708\|ref\|NP_613555.1\| coenzyme F420-reducing hydrogenase, delta subunit [Methanopyrus kandler...	236.0	[0..4]	[142..3]
gi\|39995200, gi\|... - gi\|39995200\|ref\|NP_951151.1\| heterodisulfide reductase subunit [Geobacter sulfurreducens PCA], gi\|39...	235.0	[0..5]	[140..10]
gi\|148265605, gi... - gi\|88934373\|ref\|ZP_01140016.1\| heterodisulfide reductase subunit [Geobacter uraniumreducens Rf4], gi...	234.0	[0..1]	[140..28]
gi\|726080 - gi\|726080\|gb\|AAA87440.1\| unknown [Methanothermobacter thermautotrophicus]	234.0	[0..5]	[138..3]
gi\|7450812 - pir\|\|C69018 methyl viologen-reducing hydrogenase, delta subunit - Methanobacterium thermoautotrophic... MVHD_METTH - F420-non-reducing hydrogenase iron-sulfur subunit D OS=Methanothermobacter thermautotrophicus (strai...	233.0	[0..1]	[139..1]
gi\|221566088, gi... - gi\|222056799\|ref\|YP_002539161.1\| methyl-viologen-reducing hydrogenase delta subunit [Geobacter sp. F...	232.0	[0..4]	[140..9]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPFEPKIV AFVCTYCTYA GADLAGTSRL NYAPNVRIVR LPCTGRISPM FILKALQKGA  60
   61 DSVLVSGCHP GDCHFTAGNY HARRRWTVFR ALLSFTGIPE ERIRFSWISA AEGAKFAELI 120
  121 NEITDDTRKL GPFTQYQELQ KVIETQSTY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.443697
Match:	PF02662.7
Description:	No description for PF02662.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.841	N/A	N/A	c.16.1	Lumazine synthase

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits