YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21646189, gi\|...
Organism:	Chlorobium tepidum TLS
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21646189, gi|....

Description	E-value	Query Range	Subject Range
gi\|48855976 - gi\|48855976\|ref\|ZP_00310134.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|110636965, gi... - gi\|110636965\|ref\|YP_677172.1\| hypothetical protein CHU_0545 [Cytophaga hutchinsonii ATCC 33406], gi\|...	149.0	[0..34]	[127..82]
gi\|189345880, gi... - gi\|67918834\|ref\|ZP_00512426.1\| conserved hypothetical protein [Chlorobium limicola DSM 245], gi\|6778...	114.0	[0..1]	[150..25]
gi\|78167499, gi\|... - gi\|78187597\|ref\|YP_375640.1\| hypothetical protein Plut_1743 [Pelodictyon luteolum DSM 273], gi\|78167...	108.0	[0..1]	[142..41]
gi\|145220328, gi... - gi\|71482411\|ref\|ZP_00662103.1\| conserved hypothetical protein [Prosthecochloris vibrioformis DSM 265...	103.0	[0..1]	[146..25]
gi\|110598883, gi... - gi\|110598883\|ref\|ZP_01387134.1\| hypothetical protein CferDRAFT_0040 [Chlorobium ferrooxidans DSM 130...	97.0	[0..34]	[132..56]
gi\|68551916, gi\|... - gi\|68551916\|ref\|ZP_00591309.1\| conserved hypothetical protein [Prosthecochloris aestuarii DSM 271], ...	97.0	[0..5]	[154..29]
gi\|67774058, gi\|... - gi\|67937002\|ref\|ZP_00529989.1\| hypothetical protein Cpha266DRAFT_0369 [Chlorobium phaeobacteroides D...	92.0	[0..5]	[127..29]
gi\|68243453, gi\|... - gi\|68549681\|ref\|ZP_00589142.1\| conserved hypothetical protein [Pelodictyon phaeoclathratiforme BU-1]...	90.0	[0..1]	[154..25]
gi\|78188448, gi\|... - gi\|78188448\|ref\|YP_378786.1\| hypothetical protein Cag_0470 [Chlorobium chlorochromatii CaD3], gi\|781...	85.0	[0..1]	[134..25]
gi\|67938694, gi\|... - gi\|67938694\|ref\|ZP_00531215.1\| hypothetical protein Cphamn1DRAFT_2855 [Chlorobium phaeobacteroides B...	74.0	[0..6]	[127..30]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVLWWQNYV NQRYQSVEIT RFYSGTSPRG GNKLALTDQQ KTAFRKLRQE HFRKTMPAVQ  60
   61 KIIEFKKEMI SEAVKPDPDL QKLSAIADSL GKRQAWLEKD LALHFHELAM LCTLTQRDSL 120
  121 KKLLSNIYTV RYQKMTLWKG RPHREDREDN HRGPIPPSAP EP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits