YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20517799, gi\|...
Organism:	Thermoanaerobacter tengcongensis MB4
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20517799, gi|....

Description	E-value	Query Range	Subject Range
gi\|196251628, gi... - gi\|196251628\|ref\|ZP_03150296.1\| Cobyrinic acid ac-diamide synthase [Clostridium thermocellum DSM 415... gi\|125974862, gi... - gi\|67874869\|ref\|ZP_00504449.1\| ATPase, ParA type [Clostridium thermocellum ATCC 27405], gi\|67850972\|...	247.0	[0..1]	[254..1]
gi\|51858156, gi\|... - gi\|51894467\|ref\|YP_077158.1\| ParA family ATPase [Symbiobacterium thermophilum IAM 14863], gi\|5185815...	243.0	[0..1]	[254..1]
gi\|146297750, gi... - gi\|82500912\|ref\|ZP_00886301.1\| ATPases involved in chromosome partitioning [Caldicellulosiruptor sac...	241.0	[0..1]	[253..1]
gi\|56422025, gi\|... - gi\|56422025\|ref\|YP_149343.1\| sporulation initiation inhibitor protein [Geobacillus kaustophilus HTA4... gi\|229497925, gi... - gi\|229497925\|ref\|ZP_04391624.1\| Cobyrinic acid ac-diamide synthase [Geobacillus sp. Y412MC52], gi\|22... gi\|221086934, gi... - gi\|221086934\|ref\|ZP_03556474.1\| Cobyrinic acid ac-diamide synthase [Geobacillus sp. Y412MC61], gi\|22...	239.0	[0..1]	[252..1]
gi\|106893737, gi... - gi\|158321886\|ref\|YP_001514393.1\| cobyrinic acid ac-diamide synthase [Alkaliphilus oremlandii OhILAs]...	238.0	[0..1]	[251..1]
gi\|68194822, gi\|... - gi\|69247497\|ref\|ZP_00604367.1\| Cobyrinic acid a,c-diamide synthase [Enterococcus faecium DO], gi\|681... gi\|48824601 - ref\|ZP_00285954.1\| COG1192: ATPases involved in chromosome partitioning [Enterococcus faecium]	237.0	[0..1]	[254..1]
gi\|49235569, gi\|... - gi\|83591332\|ref\|YP_431341.1\| chromosome segregation ATPase [Moorella thermoacetica ATCC 39073], gi\|8...	236.0	[0..1]	[252..1]
gi\|227518145, gi... - gi\|227518145\|ref\|ZP_03948194.1\| chromosome partitioning ATPase [Enterococcus faecalis TX0104], gi\|22... gi\|29345208, gi\|... - gi\|29377740\|ref\|NP_816894.1\| ParaA family ATPase [Enterococcus faecalis V583], gi\|29345208\|gb\|AAO829... gi\|238830948, gi... - gi\|238856387\|ref\|ZP_04646656.1\| sporulation initiation inhibitor protein soj [Enterococcus faecalis ... gi\|229304168, gi... - gi\|229550735\|ref\|ZP_04439460.1\| chromosome partitioning ATPase [Enterococcus faecalis ATCC 29200], g... gi\|229307747, gi... - gi\|229547165\|ref\|ZP_04435890.1\| chromosome partitioning ATPase [Enterococcus faecalis TX1332], gi\|22... gi\|227175226, gi... - gi\|227555649\|ref\|ZP_03985696.1\| chromosome partitioning ATPase [Enterococcus faecalis HH22], gi\|2271...	236.0	[0..1]	[252..1]
gi\|221321318 - gi\|221321318\|ref\|ZP_03602612.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... gi\|221325601 - gi\|221325601\|ref\|ZP_03606895.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... SOJ_BACSU - Sporulation initiation inhibitor protein soj OS=Bacillus subtilis GN=soj PE=1 SV=1 gi\|221316405 - gi\|221316405\|ref\|ZP_03598210.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... SOJ_BACSU - Sporulation initiation inhibitor protein Soj OS=Bacillus subtilis (strain 168) GN=soj PE=1 SV=1	235.0	[0..1]	[252..1]
gi\|52788041, gi\|... - gi\|52788041\|ref\|YP_093870.1\| hypothetical protein BLi04369 [Bacillus licheniformis ATCC 14580], gi\|5...	234.0	[0..1]	[252..1]

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Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVIAVANQ KGGVGKTTTV VNLGYALAVK GKKVLCIDID PQSNMTSGFG VNPASLDHTT  60
   61 YTVLIDEEEI ENAILKLEQY GLDIVPSSIQ LAGAEIELVP MISREYRLKK AIESVKEKYD 120
  121 YILIDCPPSL GLLTINALTA ADSVIVPIQC EYYALEGLTQ LMNTINLVKK SLNPSLEIEG 180
  181 VVLTMFNART NLSIQVVDEV KKFFKEKVYR TIIPRNIRLG EAPSYGKPIS LYDPTSKGAE 240
  241 AYEDLAEEVI ERAGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.39794
Match:	1wcv1
Description:	Structure of the bacterial chromosome segregation protein Soj
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits