YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20808873
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20808873.

Description	E-value	Query Range	Subject Range
gi\|167036637, gi... - gi\|76796157\|ref\|ZP_00778524.1\| Methylated-DNA-(protein)-cysteine S-methyltransferase [Thermoanaeroba... gi\|114845299, gi... - gi\|167039287\|ref\|YP_001662272.1\| methylated-DNA--protein-cysteine methyltransferase [Thermoanaerobac... gi\|242232317, gi... - gi\|242256119\|ref\|ZP_04801015.1\| methylated-DNA/protein-cysteine methyltransferase [Thermoanaerobacte... gi\|241903601, gi... - gi\|241903601\|ref\|ZP_04788322.1\| methylated-DNA/protein-cysteine methyltransferase [Thermoanaerobacte...	214.0	[0..23]	[177..1]
gi\|63257301, gi\|... - gi\|66046594\|ref\|YP_236435.1\| methylated-DNA-[protein]-cysteine S-methyltransferase [Pseudomonas syri...	213.0	[0..4]	[179..195]
gi\|27359161, gi\|... - gi\|27367589\|ref\|NP_763116.1\| methylated DNA-protein cysteine methyltransferase [Vibrio vulnificus CM...	212.0	[0..22]	[178..1]
gi\|186467753, gi... - gi\|23130248\|ref\|ZP_00112065.1\| COG2169: Adenosine deaminase [Nostoc punctiforme PCC 73102], gi\|18668...	211.0	[0..7]	[173..176]
gi\|71554218, gi\|... - gi\|71733665\|ref\|YP_275444.1\| ADA regulatory protein [Pseudomonas syringae pv. phaseolicola 1448A], g...	210.0	[0..4]	[179..179]
gi\|238726289, gi... - gi\|77977376\|ref\|ZP_00832826.1\| COG2169: Adenosine deaminase [Yersinia intermedia ATCC 29909], gi\|238...	210.0	[0..5]	[174..181]
gi\|13880961, gi\|... - gi\|15840768\|ref\|NP_335805.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tuber...	210.0	[0..16]	[173..3]
OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans GN=ogt PE=3 SV=1 OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans (strain ATCC 35395 ...	209.0	[0..23]	[174..1]
gi\|75231449 - gi\|75231449\|ref\|ZP_00717818.1\| COG2169: Adenosine deaminase [Escherichia coli B7A] gi\|157078603, gi... - gi\|75187009\|ref\|ZP_00700276.1\| COG2169: Adenosine deaminase [Escherichia coli E24377A], gi\|157156573...	209.0	[0..5]	[173..171]
gi\|253974126, gi... - gi\|254162225\|ref\|YP_003045333.1\| fused DNA-binding transcriptional dual regulator/O6-methylguanine-D... gi\|194424888, gi... - gi\|194436160\|ref\|ZP_03068262.1\| regulatory protein Ada [Escherichia coli 101-1], gi\|194424888\|gb\|EDX... gi\|145191 - gi\|145191\|gb\|AAA23413.1\| Ada polyprotein gi\|253978293, gi... - gi\|254288986\|ref\|YP_003054734.1\| fused DNA-binding transcriptional dual regulator/O6-methylguanine-D... gi\|242377849, gi... - gi\|251785576\|ref\|YP_002999880.1\| hypothetical protein B21_02099 [Escherichia coli BL21], gi\|24237784...	209.0	[0..5]	[173..171]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVKFFLCKF TFYFKNDKGE FYMIYKRFNS PVGVLTVFSS GKGICKIEFE NEKFPLEDFE  60
   61 EGTDFYIEEC IKELDLYFQK RLKNFDVKLD LQGTKFQMAV WEETLKIPYG SVVTYGEIAR 120
  121 RIGKPKAARA VGQALNKNSI PIIIPCHRVI GSDGNLTGFG GGIEIKKFLL KHEGVKIGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.522879
Match:	1sfeA
Description:	ADA O6-METHYLGUANINE-DNA METHYLTRANSFERASE FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylated-DNA-[protein]-cysteine S-methyltransferase activity	3.9938943760254	bayes_pls_golite062009
S-methyltransferase activity	2.96219931728042	bayes_pls_golite062009
catalytic activity	2.27882522649583	bayes_pls_golite062009
methyltransferase activity	1.63681159093596	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.6341981985862	bayes_pls_golite062009
transferase activity	1.42883081715544	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: