YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20808829
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20808829.

Description	E-value	Query Range	Subject Range
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	238.0	[0..3]	[228..5]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	237.0	[0..1]	[229..1]
gi\|20517704, gi\|... - gi\|20809033\|ref\|NP_624204.1\| response regulator [Thermoanaerobacter tengcongensis MB4], gi\|20517704\|... gi\|20809033 - gi\|20809033\|ref\|NP_624204.1\| Response regulators consisting of a CheY-like receiver domain and a HTH...	236.0	[0..1]	[229..1]
gi\|229181712, gi... - gi\|229181712\|ref\|ZP_04309035.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|218160803, gi... - gi\|218232846\|ref\|YP_002370241.1\| DNA-binding response regulator YycF [Bacillus cereus B4264], gi\|218... gi\|228629853, gi... - gi\|229153624\|ref\|ZP_04281801.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228797964, gi... - gi\|228961729\|ref\|ZP_04123333.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|206970303, gi... - gi\|206970303\|ref\|ZP_03231256.1\| DNA-binding response regulator YycF [Bacillus cereus AH1134], gi\|206... gi\|29899052, gi\|... - gi\|30023491\|ref\|NP_835122.1\| two-component response regulator yycF [Bacillus cereus ATCC 14579], gi\|...	236.0	[0..1]	[229..2]
gi\|152026417, gi... - gi\|89201694\|ref\|ZP_01180431.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	236.0	[0..1]	[229..2]
gi\|89155257, gi\|... - gi\|89206856\|ref\|ZP_01185408.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter... gi\|229020691, gi... - gi\|229020691\|ref\|ZP_04177419.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228734409, gi... - gi\|229026906\|ref\|ZP_04183230.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph...	236.0	[0..1]	[229..2]
gi\|254761652 - gi\|254761652\|ref\|ZP_05213672.1\| DNA-binding response regulator YycF [Bacillus anthracis str. Austral... gi\|221243002, gi... - gi\|222098943\|ref\|YP_002533001.1\| DNA-binding response regulator YycF [Bacillus cereus Q1], gi\|221243... gi\|118480494, gi... - gi\|118480494\|ref\|YP_897645.1\| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam],... gi\|30265484, gi\|... - gi\|30265484\|ref\|NP_847861.1\| DNA-binding response regulator YycF [Bacillus anthracis str. Ames], gi\|... gi\|42784660, gi\|... - gi\|42784660\|ref\|NP_981907.1\| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987], gi\|42... gi\|47568665, gi\|... - gi\|47568665\|ref\|ZP_00239362.1\| response regulator [Bacillus cereus G9241], gi\|47554653\|gb\|EAL13007.1... gi\|65317447, gi\|... - gi\|65317447\|ref\|ZP_00390406.1\| COG0745: Response regulators consisting of a CheY-like receiver domai... gi\|49480468, gi\|... - gi\|49480468\|ref\|YP_039456.1\| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27... gi\|52145274, gi\|... - gi\|52145274\|ref\|YP_086731.1\| response regulator [Bacillus cereus E33L], gi\|51978743\|gb\|AAU20293.1\| r... gi\|47531052, gi\|... - gi\|47531052\|ref\|YP_022401.1\| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames Ance... gi\|49182230, gi\|... - gi\|49188303\|ref\|YP_031556.1\| DNA-binding response regulator YycF [Bacillus anthracis str. Sterne], g... gi\|190559959, gi... - gi\|190568892\|ref\|ZP_03021794.1\| DNA-binding response regulator YycF [Bacillus anthracis Tsiankovskii... gi\|177651874, gi... - gi\|177651874\|ref\|ZP_02934457.1\| DNA-binding response regulator YycF [Bacillus anthracis str. A0174],... gi\|196027220, gi... - gi\|196041965\|ref\|ZP_03109252.1\| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99], gi... gi\|196036153, gi... - gi\|196036153\|ref\|ZP_03103553.1\| DNA-binding response regulator YycF [Bacillus cereus W], gi\|19599132... gi\|206745960, gi... - gi\|206975866\|ref\|ZP_03236777.1\| DNA-binding response regulator YycF [Bacillus cereus H3081.97], gi\|2... gi\|196045552, gi... - gi\|196045552\|ref\|ZP_03112783.1\| DNA-binding response regulator YycF [Bacillus cereus 03BB108], gi\|19... gi\|218539027, gi... - gi\|218906658\|ref\|YP_002454492.1\| DNA-binding response regulator YycF [Bacillus cereus AH820], gi\|218... gi\|217962959, gi... - gi\|217962959\|ref\|YP_002341537.1\| DNA-binding response regulator YycF [Bacillus cereus AH187], gi\|217... gi\|225867447, gi... - gi\|225867447\|ref\|YP_002752825.1\| DNA-binding response regulator YycF [Bacillus cereus 03BB102], gi\|2... gi\|227818235, gi... - gi\|227818235\|ref\|YP_002818244.1\| DNA-binding response regulator YycF [Bacillus anthracis str. CDC 68... gi\|164711760, gi... - gi\|165872537\|ref\|ZP_02217170.1\| DNA-binding response regulator YycF [Bacillus anthracis str. A0488],... gi\|229269286, gi... - gi\|229604878\|ref\|YP_002869675.1\| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]... gi\|254687093 - gi\|254687093\|ref\|ZP_05150951.1\| DNA-binding response regulator YycF [Bacillus anthracis str. CNEVA-9... gi\|167510623, gi... - gi\|167641448\|ref\|ZP_02399698.1\| DNA-binding response regulator YycF [Bacillus anthracis str. A0193],... gi\|254724124 - gi\|254724124\|ref\|ZP_05185909.1\| DNA-binding response regulator YycF [Bacillus anthracis str. A1055] gi\|167528366, gi... - gi\|167636251\|ref\|ZP_02394554.1\| DNA-binding response regulator YycF [Bacillus anthracis str. A0442],... gi\|254735141 - gi\|254735141\|ref\|ZP_05192851.1\| DNA-binding response regulator YycF [Bacillus anthracis str. Western... gi\|170708658, gi... - gi\|170708658\|ref\|ZP_02899097.1\| DNA-binding response regulator YycF [Bacillus anthracis str. A0389],... gi\|254742150 - gi\|254742150\|ref\|ZP_05199837.1\| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger ... gi\|170689182, gi... - gi\|170689182\|ref\|ZP_02880379.1\| DNA-binding response regulator YycF [Bacillus anthracis str. A0465],... gi\|254755940 - gi\|254755940\|ref\|ZP_05207972.1\| DNA-binding response regulator YycF [Bacillus anthracis str. Vollum]	236.0	[0..1]	[229..2]
gi\|190714057, gi... - gi\|191639755\|ref\|YP_001988921.1\| Putative response regulator [Lactobacillus casei BL23], gi\|19071405... gi\|116106380, gi... - gi\|116496230\|ref\|YP_807964.1\| DNA-binding response regulator [Lactobacillus casei ATCC 334], gi\|1161... gi\|239630681, gi... - gi\|239630681\|ref\|ZP_04673712.1\| DNA-binding response regulator [Lactobacillus paracasei subsp. parac...	235.0	[0..1]	[230..1]
gi\|28210824, gi\|... - gi\|28210824\|ref\|NP_781768.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820326...	234.0	[0..1]	[226..1]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKILVVDD EIKILEVVKS YLEREGFSVI TETNGNNVLD TFKKEKPDLV ILDLMLPGIS  60
   61 GEELCKRLRQ FSNVPILMLT AKVQESDKIN GFSIGADDYI TKPFSPRELV MRVKAILRRT 120
  121 TDDVPLAEVM SFNNDDLVVD LRAHTVRKKG VVVNLTPNEF KILKILIRNP NRVFTREELI 180
  181 EKVMGFDYEG YDRTIDAHIK NLRQKIEDDT KNPVYIKTVY GVGYKFGDGN V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.0
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits