YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20808387
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20808387.

Description	E-value	Query Range	Subject Range
gi\|241884351, gi... - gi\|241903285\|ref\|ZP_04788011.1\| HAD-superfamily hydrolase, subfamily IA, variant 3 [Thermoanaerobact... gi\|242258243, gi... - gi\|242258243\|ref\|ZP_04803066.1\| HAD-superfamily hydrolase, subfamily IA, variant 3 [Thermoanaerobact... gi\|166853930, gi... - gi\|167039690\|ref\|YP_001662675.1\| HAD family hydrolase [Thermoanaerobacter sp. X514], gi\|166853930\|gb... gi\|76589066, gi\|... - gi\|76795752\|ref\|ZP_00778124.1\| HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hy...	195.0	[0..1]	[219..1]
gi\|219993169, gi... - gi\|89211639\|ref\|ZP_01189993.1\| HAD-superfamily hydrolase subfamily IA, variant 3:HAD-superfamily hyd...	176.0	[0..1]	[207..1]
gi\|25499690 - pir\|\|F96977 probable phosphatase [imported] - Clostridium acetobutylicum gi\|15893920, gi\|... - gi\|15893920\|ref\|NP_347269.1\| phosphatase [Clostridium acetobutylicum ATCC 824], gi\|15023504\|gb\|AAK78...	174.0	[0..1]	[209..1]
gi\|56961873, gi\|... - gi\|56961873\|ref\|YP_173595.1\| hypothetical protein ABC0091 [Bacillus clausii KSM-K16], gi\|56908107\|db...	173.0	[0..2]	[222..1]
gi\|160427646, gi... - gi\|160878980\|ref\|YP_001557948.1\| HAD family hydrolase [Clostridium phytofermentans ISDg], gi\|1604276...	172.0	[0..1]	[217..1]
gi\|229811380, gi... - gi\|229845694\|ref\|ZP_04465817.1\| phosphoglycolate phosphatase [Haemophilus influenzae 6P18H1], gi\|229... gi\|144985848, gi... - gi\|145633479\|ref\|ZP_01789208.1\| phosphoglycolate phosphatase [Haemophilus influenzae 3655], gi\|14498... GPH_HAEI8 - Phosphoglycolate phosphatase OS=Haemophilus influenzae (strain 86-028NP) GN=NTHI0697 PE=3 SV=1	170.0	[0..3]	[213..6]
gi\|55247209, gi\|... - gi\|57965748\|ref\|XP_561314.1\| ENSANGP00000026891 [Anopheles gambiae str. PEST], gi\|55247209\|gb\|EAL423...	169.0	[0..3]	[213..14]
gi\|145272121, gi... - gi\|145638526\|ref\|ZP_01794135.1\| phosphoglycolate phosphatase [Haemophilus influenzae PittII], gi\|145... gi\|53733330 - gi\|53733330\|ref\|ZP_00156383.2\| COG0546: Predicted phosphatases [Haemophilus influenzae R2866]	169.0	[0..3]	[213..6]
gi\|90432041, gi\|... - gi\|90592100\|ref\|ZP_01247737.1\| HAD-superfamily hydrolase subfamily IA, variant 3:HAD-superfamily hyd...	169.0	[0..1]	[218..1]
GPH_HAEIN - Phosphoglycolate phosphatase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) G... GPH_HAEIN - Phosphoglycolate phosphatase OS=Haemophilus influenzae GN=gph PE=3 SV=1	168.0	[0..3]	[213..6]

Back

Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKAVIFDMD GVMIDSEPVH LKLERELFRE LGVEITEEEH MTFVGSSSYY MWEKIKERFN  60
   61 LKESVEELVR RDRKRYLDHV LSTGEIIPVP GIQELVKKLF EREYKLAVAS SSPIDVIELV 120
  121 VQKLNLKNFF DMLVSGDYVK KSKPYPDIFL YTAEKLRVKP EECVVIEDSY NGVHAAKSAG 180
  181 MKVIGFVNPN SGNQDLSEAD FIVKNLGDEV VEIISGLEEE KALK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	2pibA
Description:	No description for 2pibA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits