YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20807891
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20807891.

Description	E-value	Query Range	Subject Range
gi\|166854572, gi... - gi\|167040332\|ref\|YP_001663317.1\| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X514]... gi\|241903050, gi... - gi\|241903050\|ref\|ZP_04787779.1\| flagellar basal-body rod protein FlgC [Thermoanaerobacter brockii su... gi\|242231932, gi... - gi\|242256559\|ref\|ZP_04801448.1\| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X513],... gi\|76588178, gi\|... - gi\|76796414\|ref\|ZP_00778776.1\| Flagellar basal-body rod protein FlgC [Thermoanaerobacter ethanolicus...	127.0	[0..1]	[146..1]
gi\|83572535, gi\|... - gi\|83589621\|ref\|YP_429630.1\| flagellar basal-body rod protein FlgC [Moorella thermoacetica ATCC 3907...	126.0	[0..1]	[146..1]
gi\|56419752, gi\|... - gi\|56419752\|ref\|YP_147070.1\| flagellar basal body rod protein FlgC [Geobacillus kaustophilus HTA426]...	125.0	[0..1]	[146..1]
gi\|218249308, gi... - gi\|218249308\|ref\|YP_002374816.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi ZS7], g... gi\|221217671, gi... - gi\|221217671\|ref\|ZP_03589139.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 72a], gi... gi\|223888936, gi... - gi\|223888936\|ref\|ZP_03623527.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 64b], gi... gi\|224533191, gi... - gi\|224533191\|ref\|ZP_03673791.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi WI91-23]... gi\|225370268, gi... - gi\|225549042\|ref\|ZP_03770017.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 94a], gi... gi\|195941353 - gi\|195941353\|ref\|ZP_03086735.1\| flagellar basal body rod protein FlgC [Borrelia burgdorferi 80a] gi\|226234013, gi... - gi\|226320594\|ref\|ZP_03796154.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 29805], ... gi\|216264936, gi... - gi\|216264936\|ref\|ZP_03436928.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 156a], g... FLGC_BORBU - Flagellar basal-body rod protein FlgC OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 ... gi\|225550067, gi... - gi\|225550067\|ref\|ZP_03771027.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 118a], g... gi\|224533682, gi... - gi\|224533682\|ref\|ZP_03674270.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi CA-11.2a... FLGC_BORBU - Flagellar basal-body rod protein flgC OS=Borrelia burgdorferi GN=flgC PE=3 SV=1	124.0	[0..1]	[146..1]
gi\|51573124, gi\|... - gi\|51598553\|ref\|YP_072741.1\| flagellar basal body rod protein FlgC [Borrelia garinii PBi], gi\|515731...	124.0	[0..1]	[146..1]
gi\|110890392, gi... - gi\|111115118\|ref\|YP_709736.1\| flagellar basal body rod protein FlgC [Borrelia afzelii PKo], gi\|11089...	124.0	[0..1]	[146..1]
gi\|89210115, gi\|... - gi\|89210115\|ref\|ZP_01188507.1\| Flagellar basal-body rod protein FlgC [Halothermothrix orenii H 168],...	122.0	[0..3]	[146..1]
gi\|196196890, gi... - gi\|196253685\|ref\|ZP_03152300.1\| flagellar basal-body rod protein FlgC [Clostridium thermocellum DSM ... gi\|125713209, gi... - gi\|67875408\|ref\|ZP_00504748.1\| Flagellar basal-body rod protein FlgC [Clostridium thermocellum ATCC ...	118.0	[0..1]	[146..1]
gi\|110599287, gi... - gi\|222053600\|ref\|YP_002535962.1\| flagellar basal-body rod protein FlgC [Geobacter sp. FRC-32], gi\|22...	118.0	[0..1]	[146..1]
gi\|1448943 - gi\|1448943\|gb\|AAB04619.1\| flagellar basal body distal rod protein	117.0	[0..1]	[146..1]

Back

Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLFSSMDIS ATGLTAERVR MDVVSQNIAN ANTTRTVQGG PYRRKLVVFK EIQPDSFQSI  60
   61 LEKVKGKYTG KGVEVVQIIE DEQTPLRRVY DPGHPDADQQ GYVSYPNVNI VAEMVDMISA 120
  121 TRAYEANVTA FNAAKSMFQK SLEIGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.882	a.25.1	Ferritin-like
View	Download	0.741	a.25.1	Ferritin-like
View	Download	0.647	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain
View	Download	0.616	a.25.1	Ferritin-like
View	Download	0.615	a.22.1	Histone-fold
View	Download	0.611	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain
View	Download	0.584	a.1.1	Globin-like
View	Download	0.569	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.568	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits