YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20807890
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20807890.

Description	E-value	Query Range	Subject Range
FLIE_DESHD - Flagellar hook-basal body complex protein FliE OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 1...	99.0	[0..2]	[98..18]
FLIE_DESHY - Flagellar hook-basal body complex protein FliE OS=Desulfitobacterium hafniense (strain Y51) GN=fliE ...	98.0	[0..2]	[98..18]
FLIE_THEMA - Flagellar hook-basal body complex protein FliE OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DS... FLIE_THEMA - Flagellar hook-basal body complex protein FliE OS=Thermotoga maritima GN=fliE PE=3 SV=1	98.0	[0..1]	[98..1]
gi\|221562890, gi... - gi\|222053601\|ref\|YP_002535963.1\| flagellar hook-basal body complex subunit FliE [Geobacter sp. FRC-3...	96.0	[0..6]	[98..10]
gi\|88934000, gi\|... - gi\|88934000\|ref\|ZP_01139644.1\| Flagellar hook-basal body complex protein FliE [Geobacter uraniumredu...	94.0	[0..7]	[98..11]
gi\|37199415, gi\|... - gi\|37680666\|ref\|NP_935275.1\| flagellar hook-basal body protein [Vibrio vulnificus YJ016], gi\|3719941...	94.0	[0..7]	[98..28]
FLIE_OCEIH - Flagellar hook-basal body complex protein fliE OS=Oceanobacillus iheyensis GN=fliE PE=3 SV=1 FLIE_OCEIH - Flagellar hook-basal body complex protein FliE OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 1...	94.0	[0..1]	[98..6]
gi\|158320511, gi... - gi\|158320511\|ref\|YP_001513018.1\| flagellar hook-basal body protein FliE [Alkaliphilus oremlandii OhI...	93.0	[0..2]	[98..3]
gi\|67154579 - gi\|67154579\|ref\|ZP_00416324.1\| Flagellar hook-basal body complex protein FliE [Azotobacter vinelandi... gi\|67154579, gi\|... - gi\|67154579\|ref\|ZP_00416324.1\| Flagellar hook-basal body complex protein FliE [Azotobacter vinelandi...	92.0	[0..3]	[98..40]
gi\|48847140, gi\|... - gi\|78224305\|ref\|YP_386052.1\| flagellar hook-basal body complex protein FliE [Geobacter metallireduce...	92.0	[0..1]	[98..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINQITGIQP VTLTETNNIA PSTSKINSFS DFLKEALNKV NDLQLQAIED DKKLVTGEID  60
   61 DINKVMIDAV KADIALQLTI QIKNKVLEAY QEIMRMPL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.79588
Match:	PF02049.9
Description:	No description for PF02049.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.982	N/A	N/A	a.29.13	Description not found.
View	Download	0.976	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.968	N/A	N/A	a.47.1	STAT
View	Download	0.963	N/A	N/A	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View	Download	0.957	N/A	N/A	a.24.14	FAT domain of focal adhesion kinase
View	Download	0.956	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.956	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.949	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.947	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.942	N/A	N/A	a.2.7	tRNA-binding arm

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits