YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20807862
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20807862.

Description	E-value	Query Range	Subject Range
gi\|22777263, gi\|... - gi\|23099035\|ref\|NP_692501.1\| hypothetical protein OB1580 [Oceanobacillus iheyensis HTE831], gi\|22777...	202.0	[0..4]	[207..1]
gi\|83572568, gi\|... - gi\|83589654\|ref\|YP_429663.1\| CheC, inhibitor of MCP methylation [Moorella thermoacetica ATCC 39073],...	199.0	[0..7]	[206..12]
gi\|48844352, gi\|... - gi\|78224401\|ref\|YP_386148.1\| CheC, inhibitor of MCP methylation [Geobacter metallireducens GS-15], g...	199.0	[0..4]	[205..1]
gi\|39985236, gi\|... - gi\|39998290\|ref\|NP_954241.1\| chemotaxis protein CheC [Geobacter sulfurreducens PCA], gi\|39985236\|gb\|...	197.0	[0..4]	[205..1]
gi\|56419779, gi\|... - gi\|56419779\|ref\|YP_147097.1\| chemotactic methyltransferase inhibitor [Geobacillus kaustophilus HTA42...	196.0	[0..5]	[204..3]
gi\|67850626, gi\|... - gi\|67875437\|ref\|ZP_00504777.1\| CheC-like protein [Clostridium thermocellum ATCC 27405], gi\|67850626\|...	194.0	[0..3]	[203..2]
gi\|167037642, gi... - gi\|76796443\|ref\|ZP_00778805.1\| CheC-like protein [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765... gi\|166854543, gi... - gi\|167040303\|ref\|YP_001663288.1\| CheC, inhibitor of MCP methylation [Thermoanaerobacter sp. X514], g...	192.0	[0..4]	[208..1]
gi\|25352013 - pir\|\|B83954 inhibition of CheR-mediated methylation of MCPs cheC [imported] - Bacillus halodurans (s... gi\|15614997, gi\|... - gi\|15614997\|ref\|NP_243300.1\| inhibition of CheR-mediated methylation of MCPs [Bacillus halodurans C-...	191.0	[0..5]	[207..3]
gi\|28211382, gi\|... - gi\|28211382\|ref\|NP_782326.1\| chemotaxis protein cheC [Clostridium tetani E88], gi\|28203823\|gb\|AAO362...	189.0	[0..9]	[204..8]
gi\|106894615, gi... - gi\|158320540\|ref\|YP_001513047.1\| CheC, inhibitor of MCP methylation [Alkaliphilus oremlandii OhILAs]...	187.0	[0..3]	[203..2]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNVDINRLN EIYLDVLKEL GNIGAGNAIT ALSTMIGKKV DMKVPTVKIL ELVEVPDIFG  60
   61 SPDTVIVGIY FGLDGDVKGN ILFTLDLDSA SSLIWNLMGI EAKEEFDELE KSALEEIGNI 120
  121 MAGSYVASLS TLTSLNMKIS PPALSIDMAG AILSVPAIQY GEISDKILFI ETQFVEGERL 180
  181 IRGDFFLIPD INSFDLILKA LGVEVNGEQN S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	1xkrA
Description:	X-ray Structure of Thermotoga maritima CheC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits