YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20807784, gi\|...
Organism:	Thermoanaerobacter tengcongensis MB4
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20807784, gi|....

Description	E-value	Query Range	Subject Range
gi\|83590119, gi\|... - gi\|83590119\|ref\|YP_430128.1\| peptidoglycan-binding LysM [Moorella thermoacetica ATCC 39073], gi\|8357...	178.0	[0..5]	[185..3]
gi\|89160349, gi\|... - gi\|89210009\|ref\|ZP_01188402.1\| Peptidoglycan-binding LysM [Halothermothrix orenii H 168], gi\|8916034...	139.0	[0..14]	[185..3]
gi\|158320971, gi... - gi\|158320971\|ref\|YP_001513478.1\| peptidoglycan-binding LysM [Alkaliphilus oremlandii OhILAs], gi\|158...	138.0	[0..9]	[185..122]
gi\|108761372, gi... - gi\|108761372\|ref\|YP_635494.1\| chitinase, class I [Myxococcus xanthus DK 1622], gi\|108465252\|gb\|ABF90...	136.0	[0..21]	[185..2]
gi\|67849495, gi\|... - gi\|67916555\|ref\|ZP_00510261.1\| Peptidoglycan-binding LysM:ErfK/YbiS/YcfS/YnhG [Clostridium thermocel...	133.0	[0..17]	[185..10]
gi\|56419843, gi\|... - gi\|56419843\|ref\|YP_147161.1\| peptidoglycan hydrolase [Geobacillus kaustophilus HTA426], gi\|56379685\|...	131.0	[0..17]	[184..20]
SLE1_STAEQ - N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN... gi\|251811260, gi... - gi\|251811260\|ref\|ZP_04825733.1\| autolysin (N-acetylmuramoyl-L-alanine amidase [Staphylococcus epider... SLE1_STAES - N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sle1 PE...	128.0	[0..2]	[185..8]
gi\|68553697, gi\|... - gi\|68553697\|ref\|ZP_00593063.1\| Peptidoglycan-binding LysM:SLT [Prosthecochloris aestuarii DSM 271], ...	128.0	[0..21]	[184..497]
gi\|194467915, gi... - gi\|92088554\|ref\|ZP_01273516.1\| Glycoside hydrolase, family 25:Peptidoglycan-binding LysM [Lactobacil...	127.0	[0..9]	[184..209]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIDGYTPYY PHHPHPEHCR SFYTVQPGDS MWSIANKFGI SLDCLIKANP QIRDPNLIYP  60
   61 GQQICIPFYC PPVSYEQCRT IYTVRPG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.221849
Match:	2djpA
Description:	No description for 2djpA was found.

Predicted Domain #2

Region A:
Residues: [88-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSLWSIANMF GVSLDCLIKA NPQISDPNLI YPGQQICIPF YCPPPSPQTC RTIYTAKAGD  60
   61 SLWSIANMFG VSLEALIKAN PQIPDPNLIY PGQQICIP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.15
Match:	2djpA
Description:	No description for 2djpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits