YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20807473
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20807473.

Description	E-value	Query Range	Subject Range
gi\|242257355, gi... - gi\|242257355\|ref\|ZP_04802223.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter sp. X513... gi\|241904084, gi... - gi\|241904084\|ref\|ZP_04788795.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter brockii ... gi\|114844053, gi... - gi\|167040045\|ref\|YP_001663030.1\| glycerophosphodiester phosphodiesterase [Thermoanaerobacter sp. X51... gi\|166856211, gi... - gi\|76797455\|ref\|ZP_00779769.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter ethanolic...	283.0	[0..1]	[242..1]
gi\|18144079, gi\|... - gi\|18309403\|ref\|NP_561337.1\| glycerophosphodiester phosphodiesterase [Clostridium perfringens str. 1...	267.0	[0..2]	[242..3]
gi\|110800595, gi... - gi\|110800595\|ref\|YP_694881.1\| putative glycerophosphoryl diester phosphodiesterase [Clostridium perf...	267.0	[0..2]	[242..3]
gi\|110801784, gi... - gi\|110801784\|ref\|YP_697749.1\| glycerophosphoryl diester phosphodiesterase [Clostridium perfringens S...	262.0	[0..2]	[242..3]
gi\|89095935, gi\|... - gi\|89095935\|ref\|ZP_01168829.1\| YqiK [Bacillus sp. NRRL B-14911], gi\|89089681\|gb\|EAR68788.1\| YqiK [Ba...	259.0	[0..2]	[242..3]
gi\|89150508, gi\|... - gi\|89201456\|ref\|ZP_01180196.1\| Glycerophosphodiester phosphodiesterase [Bacillus cereus subsp. cytot...	256.0	[0..2]	[239..3]
gi\|51893596, gi\|... - gi\|51893596\|ref\|YP_076287.1\| glycerophosphodiester phosphodiesterase [Symbiobacterium thermophilum I...	255.0	[0..3]	[236..2]
gi\|229134982, gi... - gi\|229134982\|ref\|ZP_04263788.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus cereus BDRD-ST... gi\|228747972, gi... - gi\|229013379\|ref\|ZP_04170519.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus mycoides DSM 2... gi\|163864116, gi... - gi\|89207000\|ref\|ZP_01185549.1\| Glycerophosphodiester phosphodiesterase [Bacillus weihenstephanensis ...	254.0	[0..3]	[239..2]
gi\|47076778 - gi\|47076778\|dbj\|BAD18321.1\| glycerophosphodiester phosphodiesterase [Geobacillus stearothermophilus]	254.0	[0..3]	[241..2]
gi\|47076828 - gi\|47076828\|dbj\|BAD18368.1\| glycerophosphodiester phosphodiesterase [Geobacillus kaustophilus] gi\|56380762, gi\|... - gi\|56420920\|ref\|YP_148238.1\| glycerophosphodiester phosphodiesterase [Geobacillus kaustophilus HTA42...	253.0	[0..3]	[241..2]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLVIAHRG DSKNVPENTI AAFKRAMELG ADGIELDVQL TKDGHLVVIH DETVDRTTNG  60
   61 EGFVKDFTLE EIKKLDAGIK FGEKFAGERI PTLYEVFELI GDKDFLVNIE IKSGIVLYPG 120
  121 IEEKLIKAIK EYNFEERVII SSFNHYSLRD VKKMAPHLKI GLLYQCGLVE PWHMALRMEA 180
  181 YSLHPFYFNI IPELVEGCKK NGVKLFPWTV DRKEDMERMI KAGVDGIITD DPETLINLVR 240
  241 KGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.09691
Match:	2oogA
Description:	No description for 2oogA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits