YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20515978, gi\|...
Organism:	Thermoanaerobacter tengcongensis MB4
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20515978, gi|....

Description	E-value	Query Range	Subject Range
gi\|168204744, gi... - gi\|170663676\|gb\|EDT16359.1\| diacylglycerol kinase/PAP2 family protein [Clostridium perfringens E str... gi\|170713180, gi... - gi\|170713180\|gb\|EDT25362.1\| diacylglycerol kinase/PAP2 family protein [Clostridium perfringens B str... gi\|170715526, gi... - gi\|170715526\|gb\|EDT27708.1\| diacylglycerol kinase/PAP2 family protein [Clostridium perfringens CPE s... gi\|110674496, gi... - gi\|110799849\|ref\|YP_696697.1\| diacylglycerol kinase/PAP2 family protein [Clostridium perfringens ATC... gi\|168215644, gi... - gi\|182382267\|gb\|EDT79746.1\| diacylglycerol kinase/PAP2 family protein [Clostridium perfringens NCTC ... gi\|182624413, gi... - gi\|182624413\|ref\|ZP_02952197.1\| diacylglycerol kinase/PAP2 family protein [Clostridium perfringens D...	149.0	[0..1]	[231..1]
gi\|18310999, gi\|... - gi\|18310999\|ref\|NP_562933.1\| diacylglycerol kinase/PAP2 family protein [Clostridium perfringens str.... gi\|110683482, gi... - gi\|110802981\|ref\|YP_699298.1\| diacylglycerol kinase/PAP2 family protein [Clostridium perfringens SM1...	149.0	[0..1]	[231..1]
gi\|28204085, gi\|... - gi\|28211643\|ref\|NP_782587.1\| diacylglycerol kinase [Clostridium tetani E88], gi\|28204085\|gb\|AAO36524...	148.0	[0..1]	[231..1]
gi\|15024223, gi\|... - gi\|15894576\|ref\|NP_347925.1\| bifunctional diacylglycerol kinase/phosphatase B [Clostridium acetobuty... gi\|25499786 - pir\|\|F97059 diacylglycerol kinase (dgkA) fused to phosphatase B domain (pgpB) [imported] - Clostrid...	147.0	[0..1]	[231..1]
gi\|39984272, gi\|... - gi\|39997381\|ref\|NP_953332.1\| diacylglycerol kinase, putative [Geobacter sulfurreducens PCA], gi\|3998...	144.0	[0..1]	[232..33]
gi\|150015730, gi... - gi\|82745426\|ref\|ZP_00907938.1\| Phosphoesterase, PA-phosphatase related [Clostridium beijerincki NCIM...	139.0	[0..1]	[232..1]
gi\|110549047, gi... - gi\|222056178\|ref\|YP_002538540.1\| diacylglycerol kinase [Geobacter sp. FRC-32], gi\|221565467\|gb\|ACM21...	138.0	[0..1]	[232..1]
gi\|148263840, gi... - gi\|88935922\|ref\|ZP_01141545.1\| Phosphoesterase, PA-phosphatase related [Geobacter uraniumreducens Rf...	133.0	[0..1]	[232..1]
gi\|77687363, gi\|... - gi\|77687363\|ref\|ZP_00802611.1\| Phosphoesterase, PA-phosphatase related:Prokaryotic diacylglycerol ki...	133.0	[0..1]	[231..1]
gi\|78194827, gi\|... - gi\|78223572\|ref\|YP_385319.1\| phosphoesterase, PA-phosphatase related [Geobacter metallireducens GS-1...	132.0	[0..2]	[232..28]

Back

Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSRNLIDSF NYAIEGILHV FKTQRNMKIH FAIAIAVLFF CLFLDLTRVE FVIILFTISL  60
   61 VLIAEMINTA IETTIDMLVR NYNPMAKIAK NVAAGAVLIA AVNSVLVAYL IFFDRVNPWT 120
  121 KIVLVKI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.040959
Match:	PF01219.10
Description:	No description for PF01219.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [128-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RESPIHVTVI SILVVVFLTL ILKVYFKKGT PMRGGMPSAH SAIAFSVATA ITFMTANAFI  60
   61 STLSFLLALM VAESRVEGKI HTFSQVFVGA ILGILFTVLI FQIIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	1d2tA
Description:	Bacterial acid phosphatase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits