YRC Public Data Repository - Protein Structure Prediction

Protein:	RL27_CALS4
Organism:	Thermoanaerobacter tengcongensis MB4
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL27_CALS4.

Description	E-value	Query Range	Subject Range
RL27_DESHD - 50S ribosomal protein L27 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rpmA PE=3 SV... RL27_DESHY - 50S ribosomal protein L27 OS=Desulfitobacterium hafniense (strain Y51) GN=rpmA PE=3 SV=1	152.0	[0..1]	[94..4]
RK27_ARATH - 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana GN=RPL27 PE=2 SV=1	147.0	[0..7]	[95..59]
RL27_THEPX - 50S ribosomal protein L27 OS=Thermoanaerobacter sp. (strain X514) GN=rpmA PE=3 SV=1 gi\|242231394, gi... - gi\|242257078\|ref\|ZP_04801954.1\| ribosomal protein L27 [Thermoanaerobacter sp. X513], gi\|242231394\|gb... gi\|241884310, gi... - gi\|241903399\|ref\|ZP_04788124.1\| ribosomal protein L27 [Thermoanaerobacter brockii subsp. finnii Ako-... RL27_THEP3 - 50S ribosomal protein L27 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpmA P...	147.0	[0..1]	[95..1]
RK27_TOBAC - 50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum GN=RPL27 PE=1 SV=1	146.0	[0..7]	[95..52]
RL27_SYNWW - 50S ribosomal protein L27 OS=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) GN=...	145.0	[0..2]	[90..5]
RL27_CLOB8 - 50S ribosomal protein L27 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rpmA PE=3 ...	145.0	[0..1]	[93..4]
RL27_XANP2 - 50S ribosomal protein L27 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpmA PE=3 SV...	143.0	[0..7]	[94..2]
gi\|255516504 - gi\|255516504\|ref\|ZP_05384180.1\| 50S ribosomal protein L27 [Clostridium difficile QCD-97b34] gi\|255649604 - gi\|255649604\|ref\|ZP_05396506.1\| 50S ribosomal protein L27 [Clostridium difficile QCD-37x79] gi\|255655164 - gi\|255655164\|ref\|ZP_05400573.1\| 50S ribosomal protein L27 [Clostridium difficile QCD-23m63] gi\|255092086 - gi\|255092086\|ref\|ZP_05321564.1\| 50S ribosomal protein L27 [Clostridium difficile CIP 107932] gi\|255100177 - gi\|255100177\|ref\|ZP_05329154.1\| 50S ribosomal protein L27 [Clostridium difficile QCD-63q42] gi\|255306066 - gi\|255306066\|ref\|ZP_05350238.1\| 50S ribosomal protein L27 [Clostridium difficile ATCC 43255] gi\|255313823 - gi\|255313823\|ref\|ZP_05355406.1\| 50S ribosomal protein L27 [Clostridium difficile QCD-76w55] gi\|254974697 - gi\|254974697\|ref\|ZP_05271169.1\| 50S ribosomal protein L27 [Clostridium difficile QCD-66c26] RL27_PEPD6 - 50S ribosomal protein L27 OS=Peptoclostridium difficile (strain 630) GN=rpmA PE=3 SV=1	143.0	[0..1]	[92..4]
gi\|69249166, gi\|... - gi\|69249166\|ref\|ZP_00604888.1\| Ribosomal protein L27 [Enterococcus faecium DO], gi\|68194261\|gb\|EAN08... gi\|293572088\|ref... - ribosomal protein L27 [Enterococcus faecium E980] gi\|48823988 - ref\|ZP_00285434.1\| COG0211: Ribosomal protein L27 [Enterococcus faecium]	143.0	[0..1]	[93..5]

Back

Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILQLFAHKK GVGSSRNGRD SESKRLGVKR SDGQFVLAGN ILVRQRGTKI HPGANVGIGK  60
   61 DDTLFALIDG YVVFERKGRD KKQVSVYPER KVAQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.154902
Match:	1vs6W
Description:	No description for 1vs6W was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
peptidyltransferase activity	3.94173449567504	bayes_pls_golite062009
transferase activity, transferring amino-acyl groups	0.479709297593055	bayes_pls_golite062009
catalytic activity	0.161830442565647	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: