YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20807199, gi\|...
Organism:	Thermoanaerobacter tengcongensis MB4
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20807199, gi|....

Description	E-value	Query Range	Subject Range
gi\|166856800, gi... - gi\|76795881\|ref\|ZP_00778252.1\| DNA polymerase, beta-like region [Thermoanaerobacter ethanolicus ATCC... gi\|114844434, gi... - gi\|167040863\|ref\|YP_001663848.1\| DNA polymerase beta subunit [Thermoanaerobacter sp. X514], gi\|16685... gi\|242231867, gi... - gi\|242256606\|ref\|ZP_04801494.1\| DNA polymerase beta domain protein [Thermoanaerobacter sp. X513], gi... gi\|241903690, gi... - gi\|241903690\|ref\|ZP_04788409.1\| DNA polymerase beta domain protein region [Thermoanaerobacter brocki...	124.0	[0..1]	[146..1]
gi\|19918553, gi\|... - gi\|20093205\|ref\|NP_619280.1\| nucleotidyltransferase [Methanosarcina acetivorans C2A], gi\|19918553\|gb...	118.0	[0..1]	[140..9]
gi\|21227262, gi\|... - gi\|21227262\|ref\|NP_633184.1\| nucleotidyltransferase [Methanosarcina mazei Go1], gi\|20905610\|gb\|AAM30...	117.0	[0..1]	[140..1]
gi\|53796560 - ref\|ZP_00357512.1\| COG1708: Predicted nucleotidyltransferases [Chloroflexus aurantiacus] gi\|222448855, gi... - gi\|222524976\|ref\|YP_002569447.1\| DNA polymerase beta domain protein region [Chloroflexus sp. Y-400-f... gi\|76163342, gi\|... - gi\|76261767\|ref\|ZP_00769363.1\| DNA polymerase, beta-like region [Chloroflexus aurantiacus J-10-fl], ...	108.0	[0..10]	[138..1]
gi\|88938027, gi\|... - gi\|88938027\|ref\|ZP_01143544.1\| nucleotidyltransferase [Geobacter uraniumreducens Rf4], gi\|88915225\|g...	108.0	[0..14]	[142..27]
gi\|83589048, gi\|... - gi\|83589048\|ref\|YP_429057.1\| DNA polymerase, beta-like region [Moorella thermoacetica ATCC 39073], g...	106.0	[0..6]	[135..1]
gi\|78195703, gi\|... - gi\|78224448\|ref\|YP_386195.1\| DNA polymerase, beta-like region [Geobacter metallireducens GS-15], gi\|...	105.0	[0..14]	[139..3]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQSNLKEVE EIFRSNLSYL QEKYDIKLVY VFGSYAKGTN RKNSDLDIAV LLGGDYTLFE  60
   61 KLELIGDLVE IFKRDDVDLV ILNEANSVLR HQVIKYGKII FEESEDVRVD FEVKTLREYM 120
  121 DMEYFRKVQM DIVKEWIKEN VGENSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.221849
Match:	1wotA
Description:	Structure of putative minimal nucleotidyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring phosphorus-containing groups	0.123535769188618	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: