YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20807156
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20807156.

Description	E-value	Query Range	Subject Range
gi\|14193660 - gi\|14193660\|gb\|AAK56074.1\|AF320320_2 PglB2 [Neisseria meningitidis]	299.0	[0..1]	[200..1]
gi\|254667907, gi... - gi\|254804365\|ref\|YP_003082586.1\| pilin glycosylation protein [Neisseria meningitidis], gi\|254667907\|... gi\|218767596, gi... - gi\|7379372\|emb\|CAB83929.1\| pilin glycosylation protein [Neisseria meningitidis Z2491], gi\|218767596\|... gi\|11353849 - pir\|\|A81984 pilin glycosylation protein NMA0639 [imported] - Neisseria meningitidis (strain Z2491 se...	295.0	[0..1]	[200..1]
gi\|7227073, gi\|1... - gi\|7227073\|gb\|AAF42155.1\| pilin glycosylation protein PglB [Neisseria meningitidis MC58], gi\|1567765... gi\|11353850, gi\|... - gi\|3299889\|gb\|AAC25979.1\| PglB [Neisseria meningitidis], pir\|\|E81039 pilin glycosylation protein Pgl...	294.0	[0..1]	[200..1]
gi\|59717441, gi\|... - gi\|59800546\|ref\|YP_207258.1\| PglB [Neisseria gonorrhoeae FA 1090], gi\|59717441\|gb\|AAW88846.1\| pilin ...	291.0	[0..1]	[200..1]
gi\|146397260, gi... - gi\|88935000\|ref\|ZP_01140638.1\| sugar transferases involved in lipopolysaccharide synthesis [Geobacte...	291.0	[0..1]	[200..4]
gi\|28897005, gi\|... - gi\|28897005\|ref\|NP_796610.1\| putative UDP-galactose phosphate transferase [Vibrio parahaemolyticus R... gi\|28805213 - gi\|28805213\|dbj\|BAC58494.1\| putative UDP-galactose phosphate transferase [Vibrio parahaemolyticus RI...	289.0	[0..4]	[201..1]
gi\|92393144, gi\|... - gi\|93005466\|ref\|YP_579903.1\| undecaprenyl-phosphate galactosephosphotransferase [Psychrobacter cryoh...	289.0	[0..4]	[201..1]
gi\|52307599, gi\|... - gi\|52425547\|ref\|YP_088684.1\| WcaJ protein [Mannheimia succiniciproducens MBEL55E], gi\|52307599\|gb\|AA...	287.0	[0..4]	[200..1]
gi\|37197285, gi\|... - gi\|37678545\|ref\|NP_933154.1\| putative UDP-galactose phosphate transferase [Vibrio vulnificus YJ016],...	286.0	[0..4]	[198..1]
gi\|93355510, gi\|... - gi\|94311658\|ref\|YP_584868.1\| sugar transferase [Ralstonia metallidurans CH34], gi\|93355510\|gb\|ABF095...	285.0	[0..5]	[201..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIIKRLID IFVSLFLLII LSPFLVIISL IVFVAMGPPV IYKQTRAGFK GKPFTIYKFR  60
   61 TMTNEKDEYG NLLPDEKRLT KMGKFLRSTS LDELPELFNV LKGDMSLVGP RPLLMEYLNY 120
  121 YTEEQMRRHD VKPGITGWAQ VNGRNSLSWE EKFKLDVWYV DNWSLWLDFK ILFLTLIKVI 180
  181 KREGLSAEGY ATMPKFTGSK D

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	59.167491
Match:	PF02397.7
Description:	No description for PF02397.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits