YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20515560, gi\|...
Organism:	Thermoanaerobacter tengcongensis MB4
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20515560, gi|....

Description	E-value	Query Range	Subject Range
gi\|109640980, gi... - gi\|109647890\|ref\|ZP_01371793.1\| protein of unknown function DUF554 [Desulfitobacterium hafniense DCB...	245.0	[0..1]	[226..16]
gi\|241902671, gi... - gi\|241902671\|ref\|ZP_04787403.1\| protein of unknown function DUF554 [Thermoanaerobacter brockii subsp... gi\|76796695, gi\|... - gi\|76796695\|ref\|ZP_00779050.1\| Protein of unknown function DUF554 [Thermoanaerobacter ethanolicus AT...	235.0	[0..1]	[229..1]
gi\|77638827, gi\|... - gi\|77685359\|ref\|ZP_00800761.1\| Protein of unknown function DUF554 [Alkaliphilus metalliredigenes QYM...	235.0	[0..1]	[224..34]
gi\|219670945, gi... - gi\|219670945\|ref\|YP_002461380.1\| protein of unknown function DUF554 [Desulfitobacterium hafniense DC... gi\|89897796, gi\|... - gi\|89897796\|ref\|YP_521283.1\| hypothetical protein DSY5050 [Desulfitobacterium hafniense Y51], gi\|893...	235.0	[0..1]	[226..1]
gi\|83591329, gi\|... - gi\|83591329\|ref\|YP_431338.1\| hypothetical protein Moth_2513 [Moorella thermoacetica ATCC 39073], gi\|...	227.0	[0..1]	[225..1]
gi\|62129259, gi\|... - gi\|62181626\|ref\|YP_218043.1\| hypothetical protein SC3056 [Salmonella enterica subsp. enterica serova...	225.0	[0..1]	[227..2]
gi\|224584911, gi... - gi\|224584911\|ref\|YP_002638710.1\| hypothetical protein SPC_3183 [Salmonella enterica subsp. enterica ... gi\|56129310, gi\|... - gi\|56415053\|ref\|YP_152128.1\| hypothetical protein SPA2978 [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=yqgA] [protein=putative inner membrane protein] [protein_id=YP_005239265.1] [location=3293586.... gi\|167990354, gi... - gi\|205331062\|gb\|EDZ17826.1\| YqgA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM2... gi\|205333749, gi... - gi\|205333749\|gb\|EDZ20513.1\| YqgA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191]... gi\|168242923, gi... - gi\|205337727\|gb\|EDZ24491.1\| YqgA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486]... gi\|205346828, gi... - gi\|205346828\|gb\|EDZ33459.1\| YqgA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066],... gi\|161365448, gi... - gi\|161616084\|ref\|YP_001590049.1\| hypothetical protein SPAB_03885 [Salmonella enterica subsp. enteric... gi\|238909914 - gi\|238909914\|ref\|ZP_04653751.1\| hypothetical protein SentesTe_02100 [Salmonella enterica subsp. ente... gi\|213162843 - gi\|213162843\|ref\|ZP_03348553.1\| hypothetical protein Salmoneentericaenterica_23554 [Salmonella enter... gi\|213425499 - gi\|213425499\|ref\|ZP_03358249.1\| hypothetical protein SentesTyphi_07407 [Salmonella enterica subsp. e... gi\|213646182 - gi\|213646182\|ref\|ZP_03376235.1\| hypothetical protein SentesTy_01813 [Salmonella enterica subsp. ente... gi\|214000583 - gi\|214000583\|ref\|ZP_03411318.1\| hypothetical protein Salmonellentericaenterica_08211 [Salmonella ent... gi\|197936517, gi... - gi\|198242001\|ref\|YP_002217092.1\| YqgA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02... gi\|199604653, gi... - gi\|200387555\|ref\|ZP_03214167.1\| YqgA [Salmonella enterica subsp. enterica serovar Virchow str. SL491... gi\|204322318, gi... - gi\|204927996\|ref\|ZP_03219196.1\| YqgA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM... gi\|206710178, gi... - gi\|207858375\|ref\|YP_002245026.1\| hypothetical protein SEN2959 [Salmonella enterica subsp. enterica s... gi\|194459351, gi... - gi\|194472987\|ref\|ZP_03078971.1\| YqgA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM2... gi\|197214490, gi... - gi\|197250787\|ref\|YP_002148031.1\| YqgA [Salmonella enterica subsp. enterica serovar Agona str. SL483]... gi\|197264210, gi... - gi\|197264210\|ref\|ZP_03164284.1\| YqgA [Salmonella enterica subsp. enterica serovar Saintpaul str. SAR... gi\|197095459, gi... - gi\|197363982\|ref\|YP_002143619.1\| hypothetical protein SSPA2777 [Salmonella enterica subsp. enterica ... gi\|29139011, gi\|... - gi\|29143377\|ref\|NP_806719.1\| hypothetical protein t3028 [Salmonella enterica subsp. enterica serovar... gi\|168463694, gi... - gi\|195633509\|gb\|EDX51923.1\| YqgA [Salmonella enterica subsp. enterica serovar Newport str. SL317], g... gi\|16761890 - gi\|16761890\|ref\|NP_457507.1\| hypothetical protein STY3272 [Salmonella enterica subsp. enterica serov... gi\|205343511, gi... - gi\|205343511\|gb\|EDZ30275.1\| YqgA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N0... gi\|16504192, gi\|... - gi\|25328209\|pir\|\|AD0880 probable membrane protein yqgA [imported] - Salmonella enterica subsp. enter... gi\|194403017, gi... - gi\|194444354\|ref\|YP_002042377.1\| YqgA [Salmonella enterica subsp. enterica serovar Newport str. SL25... gi\|16766416, gi\|... - gi\|16766416\|ref\|NP_462031.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164216... gi\|194408253, gi... - gi\|194449949\|ref\|YP_002047106.1\| YqgA [Salmonella enterica subsp. enterica serovar Heidelberg str. S...	224.0	[0..1]	[227..2]
gi\|48826279 - ref\|ZP_00287501.1\| COG1811: Uncharacterized membrane protein, possible Na+ channel or pump [Enteroco... gi\|68196393, gi\|... - gi\|69244452\|ref\|ZP_00602868.1\| Protein of unknown function DUF554 [Enterococcus faecium DO], gi\|6819...	221.0	[0..2]	[225..3]
gi\|78357531, gi\|... - gi\|78357531\|ref\|YP_388980.1\| hypothetical protein Dde_2488 [Desulfovibrio desulfuricans subsp. desul...	219.0	[0..2]	[224..5]
gi\|68009491, gi\|... - gi\|68053713\|ref\|ZP_00537878.1\| Protein of unknown function DUF554 [Exiguobacterium sibiricum 255-15]...	218.0	[0..1]	[228..3]

Back

Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGTIVNSIA IIVGGTIGTL LKVGIPDRFK NIVMQGVALS VAIIGISSGL QFNNLMLVIM  60
   61 SLVIGGVIGE ALDIEGYLNR LGDTLQRKLS KDNGSTI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKGFVTASLV YCVGAMAIVG SLKEGLSGDH SILFAKSVLD GISSIIFAST FGVGVIFSAI  60
   61 SVFLYQGFIT VGASFLQGLL IKPVIDDMTA VGGILIFAIS LNMLEIKSIK VGNLLPSIFI 120
  121 PIFYQLILNL IR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits