YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20807004, gi\|...
Organism:	Thermoanaerobacter tengcongensis MB4
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20807004, gi|....

Description	E-value	Query Range	Subject Range
FLA2_TREPH - Flagellar filament 33 kDa core protein OS=Treponema phagedenis PE=1 SV=2	260.0	[0..1]	[276..1]
gi\|116328165, gi... - gi\|116328165\|ref\|YP_797885.1\| endoflagellar filament core protein [Leptospira borgpetersenii serovar... gi\|116330890, gi... - gi\|116330890\|ref\|YP_800608.1\| endoflagellar filament core protein [Leptospira borgpetersenii serovar...	254.0	[0..1]	[276..1]
gi\|45657404, gi\|... - gi\|45657404\|ref\|YP_001490.1\| flagellin protein [Leptospira interrogans serovar Copenhageni str. Fioc...	254.0	[0..1]	[276..1]
gi\|24196180, gi\|... - gi\|24215118\|ref\|NP_712599.1\| hook-associated protein, flagellin family [Leptospira interrogans serov...	254.0	[0..1]	[276..1]
FLA_BACHD - Flagellin OS=Bacillus halodurans GN=hag PE=1 SV=1 gi\|216262, gi\|477025 - pir\|\|A47684 flagellin - Bacillus sp, gi\|216262\|dbj\|BAA00952.1\| flagellin [Bacillus sp. C125] FLA_BACHD - Flagellin OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN... gi\|216262\|dbj\|BA... - flagellin [Bacillus sp.]	253.0	[0..1]	[276..1]
gi\|49328874, gi\|... - gi\|49477318\|ref\|YP_035878.1\| flagellin [Bacillus thuringiensis serovar konkukian str. 97-27], gi\|493...	253.0	[0..1]	[276..1]
FLAB2_TREPA, FLA... - Flagellar filament 33 kDa core protein OS=Treponema pallidum GN=flaB2 PE=1 SV=2, (P21991) Flagellar ... FLAB2_TREPA - Flagellar filament 33 kDa core protein OS=Treponema pallidum (strain Nichols) GN=flaB2 PE=1 SV=2 gi\|94602 - pir\|\|A37053 flagellar filament 33K core protein flaB2 - syphilis spirochete gi\|189026017, gi... - gi\|189026017\|ref\|YP_001933789.1\| flagellar filament 33 kDa core protein [Treponema pallidum subsp. p...	252.0	[0..1]	[276..1]
gi\|158141737, gi... - gi\|158321538\|ref\|YP_001514045.1\| flagellin domain-containing protein [Alkaliphilus oremlandii OhILAs...	251.0	[0..1]	[276..1]
gi\|125974721, gi... - gi\|67875272\|ref\|ZP_00504695.1\| Flagellin, C-terminal:Flagellin, N-terminal [Clostridium thermocellum...	250.0	[0..1]	[275..1]
gi\|12657818 - gi\|12657818\|gb\|AAK01040.1\| endoflagellar core protein [Leptospira biflexa] gi\|12657818 - gi\|12657818\|gb\|AAK01040.1\|AF320637_1 endoflagellar core protein [Leptospira biflexa]	250.0	[0..1]	[276..1]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIINHNLSAL NAWRALSINN FNTQKALEKL SSGYRINRAG DDAAGLAISE KMRGQINGLN  60
   61 QAIRNAQDGI SLIQTAEGAL NETHAILQRM RELVVQAAND TNTDVDRGNI QKEINQLKAE 120
  121 IDRIASTTQF NTRTLLDGSL STTGVTFQIG ANAAQNMTLT IGKMDTTTLG VDTLDVSIST 180
  181 LSSSDIAAWL TTIDNAINKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1ucuA
Description:	R-type straight flagellar filament made of full-length flagellin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [201-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQQRADLGAV QNRLEHTINN LGVAAENLTA AESRIRDVDM AKEMMEFTKN NILQQAATAM  60
   61 LAQANQQPQT VLQLLR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.84
Match:	1ucuA
Description:	R-type straight flagellar filament made of full-length flagellin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits