YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20515322, gi\|...
Organism:	Thermoanaerobacter tengcongensis MB4
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20515322, gi|....

Description	E-value	Query Range	Subject Range
gi\|242232464, gi... - gi\|242255981\|ref\|ZP_04800879.1\| phosphotransferase system PTS lactose/cellobiose-specific IIA subuni... gi\|114806629, gi... - gi\|167038933\|ref\|YP_001661918.1\| phosphotransferase system PTS, lactose/cellobiose-specific IIA subu...	141.0	[0..1]	[110..1]
gi\|241885081, gi... - gi\|241902619\|ref\|ZP_04787352.1\| phosphotransferase system PTS lactose/cellobiose-specific IIA subuni... gi\|255337184, gi... - gi\|255337184\|ref\|ZP_05378065.1\| phosphotransferase system PTS lactose/cellobiose-specific IIA subuni... gi\|76795406, gi\|... - gi\|76795406\|ref\|ZP_00777779.1\| Phosphotransferase system PTS, lactose/cellobiose-specific IIA subuni...	139.0	[0..1]	[110..1]
gi\|167529327, gi... - gi\|167635284\|ref\|ZP_02393599.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|167640461, gi... - gi\|167640461\|ref\|ZP_02398724.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|170687995, gi... - gi\|170687995\|ref\|ZP_02879208.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|170127345, gi... - gi\|170707788\|ref\|ZP_02898239.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|51973821, gi\|... - gi\|52140352\|ref\|YP_086477.1\| PTS system, cellobiose-specific IIA component (phosphotransferase enzym... gi\|177652940, gi... - gi\|177652940\|ref\|ZP_02935267.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|190561157, gi... - gi\|190567741\|ref\|ZP_03020653.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis Ts... gi\|196029671, gi... - gi\|196039511\|ref\|ZP_03106816.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus NVH05... gi\|196023464, gi... - gi\|196045633\|ref\|ZP_03112863.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus 03BB1... gi\|218537844, gi... - gi\|218906389\|ref\|YP_002454223.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus AH82... gi\|222098670, gi... - gi\|222098670\|ref\|YP_002532728.1\| PTS system, cellobiose-specific IIA component (phosphotransferase e... gi\|49188048, gi\|... - gi\|49188048\|ref\|YP_031301.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|49481192, gi\|... - gi\|49481192\|ref\|YP_039203.1\| PTS system, cellobiose-specific IIA component (phosphotransferase enzym... gi\|42740301, gi\|... - gi\|42784369\|ref\|NP_981616.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus ATCC 109... gi\|254757097 - gi\|254757097\|ref\|ZP_05209125.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|47530761, gi\|... - gi\|47530761\|ref\|YP_022110.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|254744343 - gi\|254744343\|ref\|ZP_05202023.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|21397675, gi\|... - gi\|65317184\|ref\|ZP_00390143.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|254737016, gi... - gi\|254737016\|ref\|ZP_05194721.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|30259915, gi\|... - gi\|30265238\|ref\|NP_847615.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|254724362 - gi\|254724362\|ref\|ZP_05186146.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|254686364 - gi\|254686364\|ref\|ZP_05150223.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|229604727, gi... - gi\|229604727\|ref\|YP_002869432.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis s... gi\|229187426, gi... - gi\|229187426\|ref\|ZP_04314569.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|228689075, gi... - gi\|229094308\|ref\|ZP_04225383.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|227817972, gi... - gi\|227817972\|ref\|YP_002817981.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis s... gi\|225785885, gi... - gi\|225867179\|ref\|YP_002752557.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus 03BB...	130.0	[0..2]	[104..3]
gi\|81429146, gi\|... - gi\|81429146\|ref\|YP_396147.1\| putative cellobiose-specific phosphotransferasesystem, enzyme IIA [Lact...	129.0	[0..5]	[108..8]
gi\|255519680 - gi\|255519680\|ref\|ZP_05386917.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocyt... gi\|255025572 - gi\|255025572\|ref\|ZP_05297558.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocyt... gi\|255022895 - gi\|255022895\|ref\|ZP_05294881.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocyt... gi\|254991869 - gi\|254991869\|ref\|ZP_05274059.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocyt... gi\|254877751 - gi\|254877751\|ref\|ZP_05250461.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocyt... gi\|254852015 - gi\|254852015\|ref\|ZP_05241363.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocyt... gi\|254824954 - gi\|254824954\|ref\|ZP_05229955.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocyt... gi\|226225236, gi... - gi\|226225236\|ref\|YP_002759343.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocy... gi\|47095489, gi\|... - gi\|47095489\|ref\|ZP_00233098.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocyto... gi\|47019286, gi\|... - gi\|47092307\|ref\|ZP_00230098.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocyto... gi\|16412185, gi\|... - pir\|\|AD1410 cellobiose phosphotransferase enzyme IIA component homolog lmo2685 [imported] - Listeria... gi\|16415368, gi\|... - pir\|\|AC1786 cellobiose phosphotransferase enzyme IIA component homolog lin2833 [imported] - Listeria... gi\|46908864, gi\|... - gi\|46908864\|ref\|YP_015253.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocytoge... gi\|16804722 - gi\|16804722\|ref\|NP_466207.1\| hypothetical protein lmo2685 [Listeria monocytogenes EGD-e] gi\|16801893 - gi\|16801893\|ref\|NP_472161.1\| hypothetical protein lin2833 [Listeria innocua Clip11262] gi\|217966118, gi... - gi\|217966118\|ref\|YP_002351796.1\| lichenan-specific phosphotransferase enzyme iia component (pts syst... gi\|224499357 - gi\|224499357\|ref\|ZP_03667706.1\| lichenan-specific phosphotransferase enzyme iia component (pts syste... gi\|116874050, gi... - gi\|116874050\|ref\|YP_850831.1\| PTS system, beta-glucoside-specific, IIA component [Listeria welshimer... gi\|224502909 - gi\|224502909\|ref\|ZP_03671216.1\| lichenan-specific phosphotransferase enzyme iia component (pts syste... gi\|254899863, gi... - gi\|254899863\|ref\|ZP_05259787.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocyt... gi\|153197714, gi... - gi\|254830882\|ref\|ZP_05235537.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocyt... gi\|254912931, gi... - gi\|254912931\|ref\|ZP_05262943.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocyt... gi\|254871387, gi... - gi\|254871387\|ref\|ZP_05244097.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocyt... gi\|153175992, gi... - gi\|254829134\|ref\|ZP_05233821.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocyt... gi\|153180849, gi... - gi\|254937312\|ref\|ZP_05269009.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocyt... gi\|254931046, gi... - gi\|254931046\|ref\|ZP_05264405.1\| cellobiose phosphotransferase enzyme IIA component [Listeria monocyt...	129.0	[0..1]	[98..1]
gi\|47553315, gi\|... - gi\|47570016\|ref\|ZP_00240678.1\| PTS system, IIA component [Bacillus cereus G9241], gi\|47569710\|ref\|ZP...	129.0	[0..2]	[104..3]
gi\|221325346 - gi\|221325346\|ref\|ZP_03606640.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIA compone... gi\|221321061 - gi\|221321061\|ref\|ZP_03602355.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIA compone... PTCA_BACSU, PTJA... - Lichenan-specific phosphotransferase enzyme IIA component OS=Bacillus subtilis GN=licA PE=2 SV=1, (P... gi\|221316150 - gi\|221316150\|ref\|ZP_03597955.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIA compone... PTJA_BACSU - Lichenan-specific phosphotransferase enzyme IIA component OS=Bacillus subtilis (strain 168) GN=licA ...	128.0	[0..2]	[107..4]
gi\|46907950, gi\|... - gi\|46907950\|ref\|YP_014339.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocytoge... gi\|217333401, gi... - gi\|217964131\|ref\|YP_002349809.1\| lichenan-specific phosphotransferase enzyme iia component (pts syst... gi\|255520795 - gi\|255520795\|ref\|ZP_05388032.1\| lichenan-specific phosphotransferase enzyme iia component (pts syste... gi\|254878846 - gi\|254878846\|ref\|ZP_05251556.1\| lichenan-specific phosphotransferase enzyme iia component (pts syste... gi\|254853634 - gi\|254853634\|ref\|ZP_05242982.1\| lichenan-specific phosphotransferase enzyme iia component (pts syste... gi\|153167480, gi... - gi\|254872889\|ref\|ZP_05245599.1\| lichenan-specific phosphotransferase enzyme iia component (pts syste... gi\|254826034 - gi\|254826034\|ref\|ZP_05231035.1\| lichenan-specific phosphotransferase enzyme iia component (pts syste...	128.0	[0..1]	[98..1]
gi\|218543335, gi... - gi\|218900332\|ref\|YP_002448743.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus G984... gi\|228961452, gi... - gi\|228961452\|ref\|ZP_04123064.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|206970429, gi... - gi\|206970429\|ref\|ZP_03231382.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus AH113... gi\|228903686, gi... - gi\|228903686\|ref\|ZP_04067806.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|229050875, gi... - gi\|229050875\|ref\|ZP_04194427.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|30023247, gi\|... - gi\|30023247\|ref\|NP_834878.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillus c... gi\|228968330, gi... - gi\|228968330\|ref\|ZP_04129326.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|75759426, gi\|... - gi\|75759426\|ref\|ZP_00739520.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillus... gi\|228602047, gi... - gi\|229181472\|ref\|ZP_04308800.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ...	128.0	[0..2]	[101..3]
gi\|133735122, gi... - gi\|254932836\|ref\|ZP_05266195.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIA compone... gi\|226224322, gi... - gi\|226224322\|ref\|YP_002758429.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIA compon... gi\|47017390, gi\|... - gi\|47094238\|ref\|ZP_00231949.1\| PTS system, beta-glucoside-specific, IIA component [Listeria monocyto...	128.0	[0..1]	[98..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEQIVFTI ISHAGNARSN SFEALKYARE GNFEEAEKCL EKASEELLEA HHVQTDMIHK  60
   61 EAAGEKQEIT LLLVHAEDHL MNAILAKELI TEMIELYKII YQTKGATYNV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1e2aA
Description:	Enzyme IIa from lactose specific PTS, IIa-lac
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.00429001244066	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.03872487639957	bayes_pls_golite062009
transporter activity	1.32957030120524	bayes_pls_golite062009
transmembrane transporter activity	1.20211801626802	bayes_pls_golite062009
active transmembrane transporter activity	1.08511657750399	bayes_pls_golite062009
substrate-specific transporter activity	0.93495816074069	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.81702015470704	bayes_pls_golite062009
binding	0.569728786489819	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.34582307123923	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0202700968382801	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: