YRC Public Data Repository - Protein Structure Prediction

Protein:	ENSCJAT00000028718
Organism:	Callithrix jacchus
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENSCJAT00000028718.

Description	E-value	Query Range	Subject Range
TPPC1_RAT - Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1 TPPC1_MOUSE - Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1	7.0E-50	[1..145]	[1..145]
gi\|62901898 - gi\|62901898\|gb\|AAY18900.1\| MUM2 [synthetic construct]	2.0E-47	[2..145]	[26..169]
gi\|148235479, gi... - gi\|49522147\|gb\|AAH74246.1\| MGC83988 protein [Xenopus laevis], gi\|148235479\|ref\|NP_001086138.1\| MGC83...	1.0E-45	[1..145]	[1..145]
gi\|89268748, gi\|... - gi\|89268748\|emb\|CAJ82631.1\| trafficking protein particle complex 1 [Xenopus tropicalis], gi\|56118869...	5.0E-45	[1..145]	[1..145]
gi\|57526527, gi\|... - gi\|57526527\|ref\|NP_001002742.1\| trafficking protein particle complex 1 [Danio rerio], gi\|49901436\|gb...	1.0E-44	[1..145]	[1..145]
gi\|109113167 - gi\|109113167\|ref\|XP_001111216.1\| PREDICTED: similar to trafficking protein particle complex 1 isofor...	9.0E-44	[1..145]	[1..196]
gi\|194905627, gi... - gi\|194905627\|ref\|XP_001981228.1\| GG11737 [Drosophila erecta], gi\|190655866\|gb\|EDV53098.1\| GG11737 [D... gi\|195505102, gi... - gi\|195505102\|ref\|XP_002099364.1\| GE10864 [Drosophila yakuba], gi\|194185465\|gb\|EDW99076.1\| GE10864 [D... Bet5-PA - This gene is referred to in FlyBase by the symbol Dmel\Bet5 (CG1359, FBgn0260860). It is a protein_c...	1.0E-43	[1..143]	[1..143]
gi\|76643495 - gi\|76643495\|ref\|XP_888000.1\| PREDICTED: similar to trafficking protein particle complex 1 isoform 2 ... gi\|73955586 - gi\|73955586\|ref\|XP_859732.1\| PREDICTED: similar to trafficking protein particle complex 1 isoform 3 ...	1.0E-43	[1..145]	[1..135]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVHNLYLFD RNGVCLHYSE WHRKKQAGIP KEEEYKLMYG MLFSIRSFVS KMSPLDMKDG  60
   61 FLAFQTSRYK LHYYETPTGI KVVMNTDLGV GPIRDVLHHI YSALYVELVV KNPLCPLGQT 120
  121 VQSELFRSRL DSYVRSLPFF SARAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.221849
Match:	2j3tC
Description:	No description for 2j3tC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits