YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|19705303, gi\|...
Organism:	Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19705303, gi|....

Description	E-value	Query Range	Subject Range
gi\|89096887, gi\|... - gi\|89096887\|ref\|ZP_01169778.1\| Glutathione peroxidase [Bacillus sp. NRRL B-14911], gi\|89088267\|gb\|EA...	183.0	[0..17]	[198..1]
gi\|15894827, gi\|... - gi\|15894827\|ref\|NP_348176.1\| glutathione peroxidase [Clostridium acetobutylicum ATCC 824], gi\|150245... gi\|25285641 - pir\|\|A97091 glutathione peroxidase [imported] - Clostridium acetobutylicum	182.0	[0..17]	[197..1]
gi\|6939621 - gi\|6939621\|dbj\|BAA90653.1\| Gpx [Paenibacillus polymyxa]	177.0	[0..17]	[197..1]
gi\|27887586, gi\|... - gi\|34762736\|ref\|ZP_00143725.1\| Glutathione peroxidase [Fusobacterium nucleatum subsp. vincentii ATCC...	177.0	[0..17]	[198..1]
gi\|56420320, gi\|... - gi\|56420320\|ref\|YP_147638.1\| glutathione peroxidase [Geobacillus kaustophilus HTA426], gi\|56380162\|d...	176.0	[0..17]	[197..1]
gi\|18309893, gi\|... - gi\|18309893\|ref\|NP_561827.1\| glutathione peroxidase [Clostridium perfringens str. 13], gi\|18144571\|d... gi\|169346931, gi... - gi\|169346931\|ref\|ZP_02865879.1\| glutathione peroxidase [Clostridium perfringens C str. JGS1495], gi\|... gi\|177909775, gi... - gi\|182624978\|ref\|ZP_02952756.1\| glutathione peroxidase [Clostridium perfringens D str. JGS1721], gi\|... gi\|170663489, gi... - gi\|170663489\|gb\|EDT16172.1\| glutathione peroxidase [Clostridium perfringens E str. JGS1987], gi\|1682... gi\|170716055, gi... - gi\|170716055\|gb\|EDT28237.1\| glutathione peroxidase [Clostridium perfringens CPE str. F4969], gi\|1682... gi\|168216219, gi... - gi\|182381756\|gb\|EDT79235.1\| glutathione peroxidase [Clostridium perfringens NCTC 8239], gi\|168216219...	176.0	[0..17]	[197..1]
gi\|110674820, gi... - gi\|110800173\|ref\|YP_695353.1\| glutathione peroxidase [Clostridium perfringens ATCC 13124], gi\|110674...	175.0	[0..17]	[197..1]
gi\|2982362 - gi\|2982362\|gb\|AAC78466.1\| glutathione peroxidase [Zantedeschia aethiopica]	175.0	[0..11]	[196..79]
gi\|46319251, gi\|... - gi\|67549094\|ref\|ZP_00426968.1\| Glutathione peroxidase [Burkholderia vietnamiensis G4], gi\|67529600\|g...	175.0	[0..16]	[197..1]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNLKNHLMK YERRPIMKIY DFKVKNRKGE DISLENYKGK VLLIVNTATR CGFTPQYDEL  60
   61 EALYSKYNKD GFEVLDFPCN QFGNQAPESN EEIHTFCQLN YKVKFDQFAK VEVNGENAIP 120
  121 LFKYLKEEKG FAGFDSKHKL TSVLTEMLSK NDPDFAKKSD IKWNFTKFLV DKSGNVVARF 180
  181 EPTTSAEVIE QEIKKLLEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.39794
Match:	2obiA
Description:	No description for 2obiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits