YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|19705196, gi\|...
Organism:	Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19705196, gi|....

Description	E-value	Query Range	Subject Range
gi\|27886770, gi\|... - gi\|34763559\|ref\|ZP_00144495.1\| Glycerophosphoryl diester phosphodiesterase [Fusobacterium nucleatum ...	249.0	[0..22]	[261..4]
gi\|223488779, gi... - gi\|254479407\|ref\|ZP_05092739.1\| Glycerophosphoryl diester phosphodiesterase family protein [Carboxyd... gi\|20807473 - gi\|20807473\|ref\|NP_622644.1\| Glycerophosphoryl diester phosphodiesterase [Thermoanaerobacter tengcon... gi\|20807473, gi\|... - gi\|20807473\|ref\|NP_622644.1\| glycerophosphoryl diester phosphodiesterase [Thermoanaerobacter tengcon...	246.0	[0..21]	[259..2]
gi\|25487769 - pir\|\|D84112 glycerophosphoryl diester phosphodiesterase glpQ [imported] - Bacillus halodurans (strai... gi\|10176324, gi\|... - gi\|15616262\|ref\|NP_244567.1\| glycerophosphoryl diester phosphodiesterase [Bacillus halodurans C-125]...	245.0	[0..1]	[254..16]
gi\|242257355, gi... - gi\|242257355\|ref\|ZP_04802223.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter sp. X513... gi\|241904084, gi... - gi\|241904084\|ref\|ZP_04788795.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter brockii ... gi\|114844053, gi... - gi\|167040045\|ref\|YP_001663030.1\| glycerophosphodiester phosphodiesterase [Thermoanaerobacter sp. X51... gi\|166856211, gi... - gi\|76797455\|ref\|ZP_00779769.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter ethanolic...	238.0	[0..21]	[260..2]
gi\|51893596, gi\|... - gi\|51893596\|ref\|YP_076287.1\| glycerophosphodiester phosphodiesterase [Symbiobacterium thermophilum I...	237.0	[0..22]	[257..2]
gi\|18144079, gi\|... - gi\|18309403\|ref\|NP_561337.1\| glycerophosphodiester phosphodiesterase [Clostridium perfringens str. 1...	236.0	[0..19]	[260..1]
gi\|110800595, gi... - gi\|110800595\|ref\|YP_694881.1\| putative glycerophosphoryl diester phosphodiesterase [Clostridium perf...	234.0	[0..19]	[260..1]
gi\|163940424, gi... - gi\|89208634\|ref\|ZP_01187130.1\| Glycerophosphodiester phosphodiesterase [Bacillus weihenstephanensis ...	233.0	[0..1]	[260..18]
gi\|110801784, gi... - gi\|110801784\|ref\|YP_697749.1\| glycerophosphoryl diester phosphodiesterase [Clostridium perfringens S...	231.0	[0..19]	[260..1]
gi\|22778520, gi\|... - gi\|23100288\|ref\|NP_693755.1\| glycerophosphodiester phosphodiesterase [Oceanobacillus iheyensis HTE83...	230.0	[0..3]	[258..18]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIYSNTDNI NNIQLYKEMS YMKIFAHRGA SGYAPENTLT AIKKAIEMKA DGIEIDIQLT  60
   61 KDGKIVVIHD WKVDRTTTGR GFVYELDFDY IRSLDAGQWY TKDFVGEVVP TLEEVLDVLP 120
  121 NDMMLNIEIK DTARKHSNIE EKMLEVLKKY PEKFEDIIVS SFHHDKIKRL QELEPKLKLA 180
  181 LLTDSEFIEI EKYLSTNGLK SYSYHPEINL ISKKDVEILH KNDVKVFVWT VNKEEDLDYL 240
  241 VTLGVDGVIT NYPDIMKELL M

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.522879
Match:	2oogA
Description:	No description for 2oogA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits