YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|19705146, gi\|...
Organism:	Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19705146, gi|....

Description	E-value	Query Range	Subject Range
gi\|223488820, gi... - gi\|254479380\|ref\|ZP_05092715.1\| dihydroxyacetone kinase, L subunit [Carboxydibrachium pacificum DSM ... gi\|20808399 - gi\|20808399\|ref\|NP_623570.1\| Dihydroxyacetone kinase [Thermoanaerobacter tengcongensis MB4] gi\|20517012, gi\|... - gi\|20808399\|ref\|NP_623570.1\| dihydroxyacetone kinase [Thermoanaerobacter tengcongensis MB4], gi\|2051...	228.0	[0..2]	[202..8]
gi\|53688515, gi\|... - gi\|53688515\|ref\|ZP_00110612.2\| COG2376: Dihydroxyacetone kinase [Nostoc punctiforme PCC 73102], gi\|1...	226.0	[0..3]	[202..8]
gi\|42492320 - gi\|42492320\|emb\|CAE76917.1\| glycerone kinase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi\|42560824 - gi\|42560824\|ref\|NP_975275.1\| glycerone kinase [Mycoplasma mycoides subsp. mycoides SC str. PG1]	226.0	[0..2]	[202..8]
gi\|238726542, gi... - gi\|77977975\|ref\|ZP_00833411.1\| COG2376: Dihydroxyacetone kinase [Yersinia intermedia ATCC 29909], gi...	224.0	[0..5]	[198..11]
gi\|238790049, gi... - gi\|77972929\|ref\|ZP_00828484.1\| COG2376: Dihydroxyacetone kinase [Yersinia frederiksenii ATCC 33641],...	224.0	[0..5]	[198..17]
gi\|77960667 - gi\|77960667\|ref\|ZP_00824528.1\| COG2376: Dihydroxyacetone kinase [Yersinia mollaretii ATCC 43969]	224.0	[0..5]	[198..17]
Y235_MYCCT - Putative kinase MCAP_0235 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 2...	224.0	[0..2]	[202..8]
gi\|76795737, gi\|... - gi\|76795737\|ref\|ZP_00778109.1\| Dak phosphatase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|76589... gi\|241884366, gi... - gi\|241903300\|ref\|ZP_04788026.1\| dihydroxyacetone kinase, L subunit [Thermoanaerobacter brockii subsp...	223.0	[0..2]	[202..8]
gi\|242230507, gi... - gi\|242257974\|ref\|ZP_04802816.1\| dihydroxyacetone kinase, L subunit [Thermoanaerobacter sp. X513], gi... gi\|114805609, gi... - gi\|167039676\|ref\|YP_001662661.1\| dihydroxyacetone kinase, L subunit [Thermoanaerobacter sp. X514], g...	223.0	[0..2]	[202..8]
gi\|77959677 - gi\|77959677\|ref\|ZP_00823694.1\| COG2376: Dihydroxyacetone kinase [Yersinia bercovieri ATCC 43970]	223.0	[0..5]	[198..11]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLEIIKKIS DEIIKNEEYL TELDREIGDG DHGVNLARGF TEIKNQLNNF KDLPVSDVFT  60
   61 KMGMILLTKV GGASGAIYGT AFMSAGTYLK GKTEFNNQIL LETLNSMIEG IQKRGKAVLN 120
  121 EKTMLDTIMP TYNFLEKSFN EGKNLKDIKN EVIEVAKNSM EATKDIIATK GRASYLGERS 180
  181 VGHIDPGAMS SYIMIKTVCE NI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.154902
Match:	2btdA
Description:	No description for 2btdA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits