YRC Public Data Repository - Protein Structure Prediction

Protein:	PCP_FUSNN
Organism:	Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCP_FUSNN.

Description	E-value	Query Range	Subject Range
gi\|165868832, gi... - gi\|165868832\|ref\|ZP_02213492.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. A0488], g... gi\|167514871, gi... - gi\|167637364\|ref\|ZP_02395644.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. A0193], g... gi\|170705179, gi... - gi\|170705179\|ref\|ZP_02895644.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. A0389], g... gi\|172084061, gi... - gi\|177650109\|ref\|ZP_02933110.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. A0174], g... gi\|190564734, gi... - gi\|190564734\|ref\|ZP_03017655.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis Tsiankovskii-I... gi\|49179808, gi\|... - gi\|49185881\|ref\|YP_029133.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Sterne], gi\|... gi\|50196941, gi\|... - gi\|50196941\|ref\|YP_052632.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. 'Ames Ancest... gi\|254760929 - gi\|254760929\|ref\|ZP_05212953.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Australia... gi\|254752412 - gi\|254752412\|ref\|ZP_05204448.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Vollum] gi\|254738096 - gi\|254738096\|ref\|ZP_05195799.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Western N... PCP_BACAA - Pyrrolidone-carboxylate peptidase OS=Bacillus anthracis (strain A0248) GN=pcp PE=3 SV=1 gi\|229145672, gi... - gi\|229145672\|ref\|ZP_04274055.1\| Pyrrolidone-carboxylate peptidase [Bacillus cereus BDRD-ST24], gi\|22... gi\|228928140, gi... - gi\|228928140\|ref\|ZP_04091184.1\| Pyrrolidone-carboxylate peptidase [Bacillus thuringiensis serovar po... gi\|30257673, gi\|... - gi\|30263040\|ref\|NP_845417.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Ames], gi\|30... gi\|228915662, gi... - gi\|228915662\|ref\|ZP_04079249.1\| Pyrrolidone-carboxylate peptidase [Bacillus thuringiensis serovar pu... gi\|65320351, gi\|... - gi\|65320351\|ref\|ZP_00393310.1\| COG2039: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl p... PCP_BACAC - Pyrrolidone-carboxylate peptidase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=pcp PE=3 SV=... gi\|206974548, gi... - gi\|206974548\|ref\|ZP_03235464.1\| pyrrolidone-carboxylate peptidase [Bacillus cereus H3081.97], gi\|206... PCP_BACC7 - Pyrrolidone-carboxylate peptidase OS=Bacillus cereus (strain AH187) GN=pcp PE=3 SV=1 PCP_BACAN - Pyrrolidone-carboxylate peptidase OS=Bacillus anthracis GN=pcp PE=1 SV=1	308.0	[0..1]	[212..1]
PCP_BACHK - Pyrrolidone-carboxylate peptidase OS=Bacillus thuringiensis subsp. konkukian GN=pcp PE=3 SV=1 PCP_BACHK - Pyrrolidone-carboxylate peptidase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=pcp P...	305.0	[0..1]	[212..1]
gi\|238712781, gi... - gi\|77956259\|ref\|ZP_00820376.1\| COG2039: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl p...	304.0	[0..1]	[213..1]
gi\|77978036 - gi\|77978036\|ref\|ZP_00833471.1\| COG2039: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl p...	304.0	[0..1]	[213..1]
gi\|167398887, gi... - gi\|167398887\|ref\|ZP_02304411.1\| pyroglutamyl-peptidase I [Yersinia pestis biovar Antiqua str. UG05-0... gi\|167421403, gi... - gi\|167421403\|ref\|ZP_02313156.1\| pyroglutamyl-peptidase I [Yersinia pestis biovar Orientalis str. MG0... gi\|149291818, gi... - gi\|149365405\|ref\|ZP_01887440.1\| putative pyrrolidone-carboxylate peptidase [Yersinia pestis CA88-412... gi\|167057709, gi... - gi\|167423539\|ref\|ZP_02315292.1\| pyroglutamyl-peptidase I [Yersinia pestis biovar Mediaevalis str. K1... PCP_YERPG - Pyrrolidone-carboxylate peptidase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=pcp PE=3 SV=1 gi\|167469006 - gi\|167469006\|ref\|ZP_02333710.1\| pyroglutamyl-peptidase I [Yersinia pestis FV-1] PCP_YERPB - Pyrrolidone-carboxylate peptidase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=pcp P... PCP_YERPP - Pyrrolidone-carboxylate peptidase OS=Yersinia pestis (strain Pestoides F) GN=pcp PE=3 SV=1 gi\|229688376, gi... - gi\|229898828\|ref\|ZP_04513973.1\| putative pyrrolidone-carboxylate peptidase [Yersinia pestis biovar O... gi\|229701347, gi... - gi\|229895541\|ref\|ZP_04510712.1\| putative pyrrolidone-carboxylate peptidase [Yersinia pestis Pestoide... gi\|229694630, gi... - gi\|229838264\|ref\|ZP_04458423.1\| putative pyrrolidone-carboxylate peptidase [Yersinia pestis biovar O... gi\|165922848, gi... - gi\|165925241\|ref\|ZP_02221073.1\| pyroglutamyl-peptidase I [Yersinia pestis biovar Orientalis str. F19... PCP_YERPS - Pyrrolidone-carboxylate peptidase OS=Yersinia pseudotuberculosis GN=pcp PE=3 SV=1 gi\|166008301, gi... - gi\|166008301\|ref\|ZP_02229199.1\| pyroglutamyl-peptidase I [Yersinia pestis biovar Antiqua str. E19790... gi\|166206246, gi... - gi\|166212315\|ref\|ZP_02238350.1\| pyroglutamyl-peptidase I [Yersinia pestis biovar Antiqua str. B42003... gi\|45437153, gi\|... - gi\|45442289\|ref\|NP_993828.1\| pyrrolidone-carboxylate peptidase [Yersinia pestis biovar Microtus str.... gi\|21958043, gi\|... - gi\|22125180\|ref\|NP_668603.1\| pyrrolidone-carboxylate peptidase [Yersinia pestis KIM], gi\|21958043\|gb... gi\|15980681, gi\|... - gi\|218929775\|ref\|YP_002347650.1\| pyrrolidone-carboxylate peptidase [Yersinia pestis CO92], gi\|161229... PCP_YERPA - Pyrrolidone-carboxylate peptidase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=pcp PE=3 SV=1 PCP_YERPS - Pyrrolidone-carboxylate peptidase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=pcp ... PCP_YERPN - Pyrrolidone-carboxylate peptidase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=pcp PE=3 SV=1 PCP_YERPE - Pyrrolidone-carboxylate peptidase OS=Yersinia pestis GN=pcp PE=3 SV=1 gi\|165937078, gi... - gi\|89104172\|ref\|ZP_01176723.1\| COG2039: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl p...	304.0	[0..1]	[213..1]
gi\|23003163 - gi\|23003163\|ref\|ZP_00046831.1\| COG2039: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl p... PCP_LACGA - Pyrrolidone-carboxylate peptidase OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / JCM 1131... gi\|226820393 - gi\|226820393\|ref\|ZP_03809512.1\| pyrrolidone-carboxylate peptidase [Lactobacillus gasseri MV-22]	303.0	[0..3]	[212..2]
PCP_BACC1 - Pyrrolidone-carboxylate peptidase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=pcp PE=3 SV=1	303.0	[0..1]	[212..1]
PCP1_RALSO - Pyrrolidone-carboxylate peptidase 1 OS=Ralstonia solanacearum GN=pcp1 PE=3 SV=1 PCP1_RALSO - Pyrrolidone-carboxylate peptidase 1 OS=Ralstonia solanacearum (strain GMI1000) GN=pcp1 PE=3 SV=1	303.0	[0..1]	[213..1]
gi\|221231641, gi... - gi\|221231641\|ref\|YP_002510793.1\| pyrrolidone-carboxylate peptidase [Streptococcus pneumoniae ATCC 70... gi\|225856527, gi... - gi\|225856527\|ref\|YP_002738038.1\| pyroglutamyl-peptidase I [Streptococcus pneumoniae P1031], gi\|22572... PCP1_STRPN - Pyrrolidone-carboxylate peptidase 1 OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TI... gi\|225728134, gi... - gi\|225861246\|ref\|YP_002742755.1\| pyroglutamyl-peptidase I [Streptococcus pneumoniae Taiwan19F-14], g... gi\|225854366, gi... - gi\|225854366\|ref\|YP_002735878.1\| pyroglutamyl-peptidase I [Streptococcus pneumoniae JJA], gi\|2257239... gi\|168493014, gi... - gi\|183577052\|gb\|EDT97580.1\| pyroglutamyl-peptidase I [Streptococcus pneumoniae CDC3059-06], gi\|16849... PCP_STRP2 - Pyrrolidone-carboxylate peptidase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN... gi\|168575516, gi... - gi\|183578623\|gb\|EDT99151.1\| pyroglutamyl-peptidase I [Streptococcus pneumoniae MLV-016], gi\|16857551... PCP_STRPI - Pyrrolidone-carboxylate peptidase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=pcp PE=3 SV=1 gi\|237822246 - gi\|237822246\|ref\|ZP_04598091.1\| pyrrolidone-carboxylate peptidase [Streptococcus pneumoniae CCRI 197... gi\|182629108, gi... - gi\|182683774\|ref\|YP_001835521.1\| pyrrolidone-carboxylate peptidase [Streptococcus pneumoniae CGSP14]... gi\|242245140, gi... - gi\|242245140\|ref\|ZP_04799577.1\| pyrrolidone-carboxylate peptidase [Streptococcus pneumoniae TCH8431/... gi\|148993672, gi... - gi\|148993672\|ref\|ZP_01823119.1\| pyrrolidone-carboxylate peptidase [Streptococcus pneumoniae SP9-BS68... gi\|172042083, gi... - gi\|172042083\|gb\|EDT50129.1\| pyroglutamyl-peptidase I [Streptococcus pneumoniae CDC1873-00], gi\|16848... gi\|147925960, gi... - gi\|148988279\|ref\|ZP_01819726.1\| pyrrolidone-carboxylate peptidase [Streptococcus pneumoniae SP6-BS73... gi\|168485808, gi... - gi\|183571051\|gb\|EDT91579.1\| pyroglutamyl-peptidase I [Streptococcus pneumoniae CDC1087-00], gi\|16848... gi\|147922981, gi... - gi\|148984590\|ref\|ZP_01817858.1\| pyrrolidone-carboxylate peptidase [Streptococcus pneumoniae SP3-BS71... gi\|183571351, gi... - gi\|183571351\|gb\|EDT91879.1\| pyroglutamyl-peptidase I [Streptococcus pneumoniae SP195], gi\|168490293\|... gi\|183574584, gi... - gi\|183574584\|gb\|EDT95112.1\| pyroglutamyl-peptidase I [Streptococcus pneumoniae CDC0288-04], gi\|16849... PCP1_STRR6 - Pyrrolidone-carboxylate peptidase 1 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pcp1 P... PCP1_STRPN - Pyrrolidone-carboxylate peptidase 1 OS=Streptococcus pneumoniae GN=pcp1 PE=3 SV=1 gi\|147764991, gi... - gi\|149010510\|ref\|ZP_01831881.1\| pyrrolidone-carboxylate peptidase [Streptococcus pneumoniae SP19-BS7... gi\|149007196, gi... - gi\|149007196\|ref\|ZP_01830860.1\| pyrrolidone-carboxylate peptidase [Streptococcus pneumoniae SP18-BS7... gi\|147756764, gi... - gi\|148997064\|ref\|ZP_01824718.1\| pyrrolidone-carboxylate peptidase [Streptococcus pneumoniae SP11-BS7...	302.0	[0..3]	[211..2]
gi\|47558371, gi\|... - gi\|47564219\|ref\|ZP_00235264.1\| pyrrolidone-carboxylate peptidase [Bacillus cereus G9241], gi\|4755837...	302.0	[0..1]	[212..1]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKILVTGFD PFGGEKINPA LEVIKLLPKK IGENEIKILE IPTVYKKSIE KIDKEIESYD  60
   61 PDYILSIGQA GGRTDISIER IAINIDDFRI KDNEGNQPID EKIYLDGDNA YFSTLPIKAI 120
  121 QSEITKNGIP ASISNTAGTF VCNHVFYGVR YLIEKKYKGK KSGFIHIPYL PEQIIGKADT 180
  181 PSMSLDNILK GITIAIEIIF SVENDIKKLG GSIC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.0
Match:	1augA
Description:	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits