YRC Public Data Repository - Protein Structure Prediction

Protein:	RNP1_PYRFU
Organism:	Pyrococcus furiosus DSM 3638
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNP1_PYRFU.

Description	E-value	Query Range	Subject Range
RNP1_PYRAB - Ribonuclease P protein component 1 OS=Pyrococcus abyssi GN=rnp1 PE=3 SV=1 RNP1_PYRAB - Ribonuclease P protein component 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rnp1 PE=3 SV=1	176.0	[0..1]	[127..1]
RNP1_PYRHO - Ribonuclease P protein component 1 OS=Pyrococcus horikoshii GN=rnp1 PE=1 SV=1 RNP1_PYRHO - Ribonuclease P protein component 1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 99...	171.0	[0..1]	[127..1]
RNP1_PYRKO - Ribonuclease P protein component 1 OS=Pyrococcus kodakaraensis GN=rnp1 PE=3 SV=1 RNP1_THEKO - Ribonuclease P protein component 1 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / K...	157.0	[0..1]	[127..1]
gi\|73948573 - gi\|73948573\|ref\|XP_855541.1\| PREDICTED: similar to Ribonuclease P protein subunit p29 (hPOP4) [Canis...	129.0	[0..37]	[126..211]
gi\|50753751 - gi\|50753751\|ref\|XP_414118.1\| PREDICTED: similar to Ribonuclease P protein subunit p29 (hPOP4) [Gallu...	128.0	[0..37]	[126..688]
gi\|62857835, gi\|... - gi\|62857835\|ref\|NP_001017252.1\| hypothetical protein LOC550006 [Xenopus (Silurana) tropicalis], gi\|1...	125.0	[0..37]	[126..123]
gi\|42550668, gi\|... - gi\|46116686\|ref\|XP_384361.1\| hypothetical protein FG04185.1 [Gibberella zeae PH-1], gi\|42550668\|gb\|E...	123.0	[0..18]	[126..103]
gi\|55670407, gi\|... - gi\|55670408\|pdb\|1V76\|B Chain B, Crystal Structure Of Archaeal Ribonuclease P Protein Ph1771p From Py...	123.0	[0..32]	[127..1]
RPP29_BOVIN - Ribonuclease P protein subunit p29 OS=Bos taurus GN=POP4 PE=2 SV=1	123.0	[0..37]	[126..124]
gi\|114676456 - gi\|114676456\|ref\|XP_001149225.1\| PREDICTED: similar to Pop4 protein isoform 5 [Pan troglodytes]	123.0	[0..37]	[126..153]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRNSEEREN RTSGRSQGSY QEIIGRTWIF RGAHRGRVNK KNIVWHELIG LKVRVVNSTH  60
   61 PGYVGIEGYV IDETRNMLVI AGENKVWKVP KDVCIFEFET WDGTKIKISG EKLVGRPEMR 120
  121 LKKRWRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1v76A
Description:	Crystal Structure of Archaeal Ribonuclease P Protein Ph1771p from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits