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View Structure Prediction Details

Protein: NAT5_ARATH
Organism: Arabidopsis thaliana
Length: 528 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAT5_ARATH.

Description E-value Query
Range
Subject
Range
NAT6_ARATH - Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2
310.0 [0..2] [528..6]

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Predicted Domain #1
Region A:
Residues: [1-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPKSGGDP LPHPPKEQLP DISYCITSPP PWPEAVLLGF QHYLVMLGTT VLIPSALVPQ  60
   61 MGGRNEEKAK LIQTILFVAG LNTLLQTVFG TRLPAVIGAS YTFVPVTISI MLSGRFNDVA 120
  121 DPVERFKRII RATQGALIVA STLQIILGFS GLWRNVVRFL SPLSAAPLVG LVGYGLYELG 180
  181 F

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [182-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGVAKCIEIG LPGLIILILI SQYMPHVIKG GKHVFARFAV IFSVAIVWLY AFFLTLGGAY  60
   61 NGVGTDTQRS CRTDRAGLIS AAPWIRVPWP FQWGAPLFDA GEAFAMMMAS FVALVESTGA 120
  121 FIAVSRYASA TM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [314-528]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPSVISRGV GWQGVAILIS GLFGTGIGSS VSVENAGLLA LTKIGSRRVV QISAGFMIFF  60
   61 SILGKFGAVF ASIPSPIIAA LYCLFFAYVG AGGLSLLQFC NLNSFRTLFI LGFSIFLGLS 120
  121 IPQYFNEHTA IKGYGPVHTG ARWFNDMVNV PFSSKAFVGG CVAYLLDTTL HKKDGSIRKD 180
  181 RGKHWWDRFW TFKNDPRTEE FYALPFNLNK YFPSV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle