YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25526080
Organism:	Brucella melitensis
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25526080.

Description	E-value	Query Range	Subject Range
gi\|254715463 - gi\|254715463\|ref\|ZP_05177274.1\| hypothetical protein BcetM_03251 [Brucella ceti M13/05/1] gi\|83269544 - gi\|83269544\|ref\|YP_418835.1\| hypothetical protein BAB2_0660 [Brucella melitensis biovar Abortus 2308... gi\|254720433 - gi\|254720433\|ref\|ZP_05182244.1\| hypothetical protein Bru83_13077 [Brucella sp. 83/13] gi\|62197756, gi\|... - gi\|62317563\|ref\|YP_223416.1\| hypothetical protein BruAb2_0644 [Brucella abortus bv. 1 str. 9-941], g... gi\|254711151 - gi\|254711151\|ref\|ZP_05172962.1\| hypothetical protein BpinB_12992 [Brucella pinnipedialis B2/94] gi\|82939818 - gi\|82939818\|emb\|CAJ12826.1\| Protein of unknown function DUF339 [Brucella melitensis biovar Abortus 2... gi\|148558220, gi... - gi\|148558220\|ref\|YP_001257568.1\| hypothetical protein BOV_A0545 [Brucella ovis ATCC 25840], gi\|14836... gi\|254712391 - gi\|254712391\|ref\|ZP_05174202.1\| hypothetical protein BcetM6_03231 [Brucella ceti M644/93/1] gi\|254732292 - gi\|254732292\|ref\|ZP_05190870.1\| hypothetical protein Babob42_14205 [Brucella abortus bv. 4 str. 292] gi\|23500324, gi\|... - gi\|23500324\|ref\|NP_699764.1\| hypothetical protein BRA0580 [Brucella suis 1330], gi\|23463937\|gb\|AAN33... gi\|163675455, gi... - gi\|163844732\|ref\|YP_001622387.1\| hypothetical protein BSUIS_B0576 [Brucella suis ATCC 23445], gi\|163... gi\|254691060 - gi\|254691060\|ref\|ZP_05154314.1\| hypothetical protein Babob68_13104 [Brucella abortus bv. 6 str. 870] gi\|189021391, gi... - gi\|189022817\|ref\|YP_001932558.1\| Protein of unknown function DUF339 [Brucella abortus S19], gi\|18902... gi\|254695634 - gi\|254695634\|ref\|ZP_05157462.1\| hypothetical protein Babob3T_13532 [Brucella abortus bv. 3 str. Tuly... gi\|225642471, gi... - gi\|225686366\|ref\|YP_002734338.1\| protein of unknown function DUF339 [Brucella melitensis ATCC 23457]... gi\|254702955 - gi\|254702955\|ref\|ZP_05164783.1\| hypothetical protein Bsuib36_03259 [Brucella suis bv. 3 str. 686] gi\|254705927 - gi\|254705927\|ref\|ZP_05167755.1\| hypothetical protein BpinM_02696 [Brucella pinnipedialis M163/99/10] gi\|254698845 - gi\|254698845\|ref\|ZP_05160673.1\| hypothetical protein Babob28_14417 [Brucella abortus bv. 2 str. 86/8... gi\|161620642, gi... - gi\|161620642\|ref\|YP_001594528.1\| hypothetical protein BCAN_B0580 [Brucella canis ATCC 23365], gi\|161... gi\|254699817 - gi\|254699817\|ref\|ZP_05161645.1\| hypothetical protein Bsuib55_03001 [Brucella suis bv. 5 str. 513]	122.0	[0..1]	[97..1]
gi\|86281815, gi\|... - gi\|86357713\|ref\|YP_469605.1\| hypothetical protein RHE_CH02094 [Rhizobium etli CFN 42], gi\|86281815\|g...	117.0	[0..1]	[92..27]
gi\|69279487, gi\|... - gi\|69279487\|ref\|ZP_00614342.1\| Protein of unknown function DUF339 [Mesorhizobium sp. BNC1], gi\|68190...	117.0	[0..1]	[90..26]
gi\|37728038 - gi\|37728038\|gb\|AAO43499.1\| unknown [Rhizobium etli]	115.0	[0..1]	[92..1]
gi\|25519968, gi\|... - pir\|\|AD2795 conserved hypothetical protein Atu1779 [imported] - Agrobacterium tumefaciens (strain C5... gi\|17935672, gi\|... - gi\|17935672\|ref\|NP_532462.1\| hypothetical protein Atu1779 [Agrobacterium tumefaciens str. C58], gi\|1...	114.0	[0..1]	[92..4]
gi\|14021723, gi\|... - gi\|14021723\|dbj\|BAB48335.1\| msl0828 [Mesorhizobium loti MAFF303099], gi\|13470980\|ref\|NP_102549.1\| hy...	113.0	[0..1]	[97..1]
gi\|238878710 - gi\|238878710\|gb\|EEQ42348.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|46445447, gi\|... - gi\|68464673\|ref\|XP_723414.1\| hypothetical protein CaO19.4727 [Candida albicans SC5314], gi\|46445447\|... orf19.4727 - orf19.4727 CGDID:CAL0004404 Assembly 19, Contig19-10215 (10550, 11017) CDS, translated using codon t...	113.0	[0..4]	[96..43]
gi\|46204975 - gi\|46204975\|ref\|ZP_00049218.2\| COG2938: Uncharacterized conserved protein [Magnetospirillum magnetot...	112.0	[0..1]	[91..1]
gi\|115256785, gi... - gi\|116252137\|ref\|YP_767975.1\| hypothetical protein RL2385 [Rhizobium leguminosarum bv. viciae 3841],...	112.0	[0..1]	[92..1]

Back

Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGSTMATEN LDVRRRKLLF RAWHRGMREM DLILGQYADK YIVSFNDDQL NEFEHILEVL  60
   61 DRDLLKWVTG ESPSPIPAEY DTPLFRDIVA FRDRVEF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1x6iA
Description:	Crystal structure of ygfY from Escherichia coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits