YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17988228, gi\|...
Organism:	Brucella melitensis bv. 1 str. 16M
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17988228, gi|....

Description	E-value	Query Range	Subject Range
gi\|20807045, gi\|... - gi\|20807045\|ref\|NP_622216.1\| 3-hydroxybutyryl-CoA dehydratase [Thermoanaerobacter tengcongensis MB4]... gi\|20807045 - gi\|20807045\|ref\|NP_622216.1\| enoyl-CoA hydratase [Thermoanaerobacter tengcongensis MB4]	300.0	[0..37]	[293..1]
gi\|28204455, gi\|... - gi\|28212012\|ref\|NP_782956.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium tetani E88], gi\|28204455\|...	294.0	[0..37]	[293..1]
gi\|241218800, gi... - gi\|241769557\|ref\|ZP_04766976.1\| Enoyl-CoA hydratase/isomerase [Sulfolobus solfataricus 98/2], gi\|241... gi\|25291790 - pir\|\|A90436 enoyl CoA hydratase (paaF-7) [imported] - Sulfolobus solfataricus gi\|13815932, gi\|... - gi\|15899349\|ref\|NP_343954.1\| enoyl CoA hydratase (paaF-7) [Sulfolobus solfataricus P2], gi\|13815932\|...	291.0	[0..39]	[292..9]
gi\|18145966, gi\|... - gi\|18311283\|ref\|NP_563217.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens str. 13], gi\|... gi\|110673862, gi... - gi\|110799215\|ref\|YP_696975.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens ATCC 13124],... gi\|182625533, gi... - gi\|182625533\|ref\|ZP_02953304.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens D str. JGS... gi\|170715197, gi... - gi\|170715197\|gb\|EDT27379.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens CPE str. F4969...	288.0	[0..37]	[293..1]
gi\|110683900, gi... - gi\|110803399\|ref\|YP_699562.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens SM101], gi\|1...	286.0	[0..37]	[293..1]
gi\|88926146, gi\|... - gi\|88944140\|ref\|ZP_01147473.1\| putative crotonase [Desulfotomaculum reducens MI-1], gi\|88926146\|gb\|E...	284.0	[0..37]	[293..1]
gi\|70606884, gi\|... - gi\|70606884\|ref\|YP_255754.1\| 3-hydroxybutyryl-CoA dehydrogenase [Sulfolobus acidocaldarius DSM 639],...	282.0	[0..37]	[292..406]
gi\|15622596, gi\|... - gi\|15921809\|ref\|NP_377478.1\| 3-hydroxybutyryl-CoA dehydratase [Sulfolobus tokodaii str. 7], gi\|15622...	282.0	[0..40]	[293..14]
gi\|118348110, gi... - gi\|89289297\|gb\|EAR87285.1\| enoyl-CoA hydratase/isomerase family protein [Tetrahymena thermophila SB2... gi\|118348110 - gi\|118348110\|ref\|XP_001007530.1\| enoyl-CoA hydratase/isomerase family protein [Tetrahymena thermophi...	281.0	[0..25]	[292..18]
gi\|1903327 - gi\|1903327\|emb\|CAB07495.1\| crotonase [Thermoanaerobacterium thermosaccharolyticum] gi\|1903327\|emb\|C... - crotonase [Thermoanaerobacterium thermosaccharolyticum]	281.0	[0..37]	[290..1]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVQFAPRNF KAGQPCRHII PDEPGCHALM KEERVYMAYE TIIVETRDSV GLIRLNRPQA  60
   61 LNALNRAVLE ELTDALAAFD ADGKVGAVVL TGSEKAFAAG ADIKEMQLIN FVDAYLQDMF 120
  121 ADWQKVDRIR KPIIAAVSGY ALGGGCELAM MCDFIIAGSN AKFGQPEITL GAIPGMGGSQ 180
  181 RLTRYVGKSK AMDMCLTGRM MDAAEAERCG LVSRVVAPEA LLEEALKAAE RIASFSRVSV 240
  241 YMAKEAVNRA YETTLDEGLR FERRLFHSLF ATEDQKEGMS AFVDKRTPSF KNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.0
Match:	2hw5A
Description:	No description for 2hw5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits