YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17983942, gi\|...
Organism:	Brucella melitensis bv. 1 str. 16M
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17983942, gi|....

Description	E-value	Query Range	Subject Range
gi\|1773113 - gi\|1773113\|gb\|AAB40185.1\| cytochrome o ubiquinol oxidase C subunit [Escherichia coli]	174.0	[0..1]	[135..1]
gi\|115511813, gi... - gi\|117622689\|ref\|YP_851602.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli APEC O1], ...	173.0	[0..1]	[135..1]
gi\|33593692, gi\|... - gi\|33593692\|ref\|NP_881336.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella pertussis Tohama I]... gi\|33565846 - gi\|33565846\|emb\|CAE36392.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella parapertussis] gi\|33595767 - gi\|33595767\|ref\|NP_883410.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella parapertussis 12822... gi\|33600293, gi\|... - gi\|33600293\|ref\|NP_887853.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella bronchiseptica RB50...	152.0	[0..13]	[148..1]
gi\|163842321, gi... - gi\|163842321\|ref\|YP_001626725.1\| cytochrome o ubiquinol oxidase subunit IV [Brucella suis ATCC 23445... gi\|161618035, gi... - gi\|161618035\|ref\|YP_001591922.1\| cytochrome o ubiquinol oxidase subunit IV [Brucella canis ATCC 2336... gi\|62289032, gi\|... - gi\|62289032\|ref\|YP_220825.1\| QoxD, ubiquinol oxidase subunit IV [Brucella abortus bv. 1 str. 9-941],... gi\|82698969 - gi\|82698969\|ref\|YP_413543.1\| cytochrome C oxidase subunit IV [Brucella melitensis biovar Abortus 230... gi\|82615070 - gi\|82615070\|emb\|CAJ09998.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella melitensis biovar ... gi\|254694846 - gi\|254694846\|ref\|ZP_05156674.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella abortus bv. 3 ... gi\|254696475 - gi\|254696475\|ref\|ZP_05158303.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella abortus bv. 2 ... gi\|254709204 - gi\|254709204\|ref\|ZP_05171015.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella pinnipedialis ... gi\|254713371 - gi\|254713371\|ref\|ZP_05175182.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella ceti M644/93/1... gi\|148560321, gi... - gi\|148560321\|ref\|YP_001258092.1\| cytochrome o ubiquinol oxidase subunit IV [Brucella ovis ATCC 25840... gi\|254705226 - gi\|254705226\|ref\|ZP_05167054.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella suis bv. 3 str... gi\|254707255 - gi\|254707255\|ref\|ZP_05169083.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella pinnipedialis ... gi\|254731387 - gi\|254731387\|ref\|ZP_05189965.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella abortus bv. 4 ... gi\|254716271 - gi\|254716271\|ref\|ZP_05178082.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella ceti M13/05/1] gi\|254718265 - gi\|254718265\|ref\|ZP_05180076.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella sp. 83/13] gi\|189018879, gi... - gi\|189023307\|ref\|YP_001934075.1\| Prokaryotic Cytochrome C oxidase subunit IV [Brucella abortus S19],...	152.0	[0..28]	[148..1]
gi\|23500960, gi\|... - gi\|23500960\|ref\|NP_697087.1\| ubiquinol oxidase subunit IV [Brucella suis 1330], gi\|23346817\|gb\|AAN29...	150.0	[0..28]	[148..1]
gi\|114536608, gi... - gi\|114707979\|ref\|ZP_01440871.1\| Prokaryotic Cytochrome C oxidase subunit IV [Fulvimarina pelagi HTCC...	142.0	[0..29]	[148..16]
gi\|84328256 - gi\|84328256\|ref\|ZP_00976263.1\| COG1845: Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Pseud...	139.0	[0..1]	[137..179]
gi\|37527738, gi\|... - gi\|37527738\|ref\|NP_931083.1\| cytochrome o ubiquinol oxidase subunit IV [Photorhabdus luminescens sub...	137.0	[0..28]	[135..1]
gi\|77974312 - gi\|77974312\|ref\|ZP_00829853.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Yersi...	135.0	[0..28]	[135..1]
gi\|77962957 - gi\|77962957\|ref\|ZP_00826772.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Yersi... gi\|77979400 - gi\|77979400\|ref\|ZP_00834819.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Yersi... gi\|77956946 - gi\|77956946\|ref\|ZP_00821018.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Yersi...	135.0	[0..23]	[135..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQPVLALPR HHLDRRFHSC LSVGSPVMSS AHQTHDHAAH GSLKSYLIGF VLAVILTVVP  60
   61 FALAMGGYFT PATTAVIVLA IAAVQILVHL IYFLYLDPKS EGGWNMLALV FTGIILAIVL 120
  121 IGSIWIMYHL DTNMMPMYMT PDNVRNLP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.657577
Match:	PF03626.5
Description:	No description for PF03626.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits