YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25311554
Organism:	Brucella melitensis
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25311554.

Description	E-value	Query Range	Subject Range
gi\|189023421, gi... - gi\|189023421\|ref\|YP_001934189.1\| GrpE protein [Brucella abortus S19], gi\|189018993\|gb\|ACD71715.1\| Gr... gi\|254694961 - gi\|254694961\|ref\|ZP_05156789.1\| heat shock protein GrpE [Brucella abortus bv. 3 str. Tulya] gi\|254696592 - gi\|254696592\|ref\|ZP_05158420.1\| heat shock protein GrpE [Brucella abortus bv. 2 str. 86/8/59] gi\|237814640, gi... - gi\|237814640\|ref\|ZP_04593638.1\| Protein grpE [Brucella abortus str. 2308 A], gi\|237789477\|gb\|EEP6368... gi\|254690472 - gi\|254690472\|ref\|ZP_05153726.1\| heat shock protein GrpE [Brucella abortus bv. 6 str. 870] gi\|254731505 - gi\|254731505\|ref\|ZP_05190083.1\| heat shock protein GrpE [Brucella abortus bv. 4 str. 292] GRPE_BRUME - Protein GrpE OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=grpE PE=3 SV... gi\|82699086 - gi\|82699086\|ref\|YP_413660.1\| GrpE protein [Brucella melitensis biovar Abortus 2308] GRPE_BRUME - Protein grpE OS=Brucella melitensis GN=grpE PE=3 SV=2 gi\|82615187 - gi\|82615187\|emb\|CAJ10126.1\| GrpE protein [Brucella melitensis biovar Abortus 2308] gi\|62195279, gi\|... - gi\|62289147\|ref\|YP_220940.1\| GrpE, heat shock protein [Brucella abortus bv. 1 str. 9-941], gi\|621952...	202.0	[0..1]	[176..51]
GRPE_BRUSU - Protein GrpE OS=Brucella suis biovar 1 (strain 1330) GN=grpE PE=3 SV=1 gi\|225640069, gi... - gi\|225851704\|ref\|YP_002731937.1\| Protein grpE [Brucella melitensis ATCC 23457], gi\|225640069\|gb\|ACN9... gi\|225626709, gi... - gi\|225626709\|ref\|ZP_03784748.1\| Protein grpE [Brucella ceti str. Cudo], gi\|225618366\|gb\|EEH15409.1\| ... gi\|254705347 - gi\|254705347\|ref\|ZP_05167175.1\| heat shock protein GrpE [Brucella suis bv. 3 str. 686] gi\|254700976 - gi\|254700976\|ref\|ZP_05162804.1\| heat shock protein GrpE [Brucella suis bv. 5 str. 513] gi\|254709317 - gi\|254709317\|ref\|ZP_05171128.1\| heat shock protein GrpE [Brucella pinnipedialis B2/94] GRPE_BRUSU - Protein grpE OS=Brucella suis GN=grpE PE=3 SV=1 GRPE_BRUC2 - Protein GrpE OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=grpE PE=3 SV=1	202.0	[0..1]	[176..55]
GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii GN=mge1 PE=3 SV=1 GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /...	194.0	[0..1]	[161..51]
GRPE_RHILO - Protein GrpE OS=Rhizobium loti (strain MAFF303099) GN=grpE PE=3 SV=1 GRPE_RHILO - Protein grpE OS=Rhizobium loti GN=grpE PE=3 SV=1	193.0	[0..6]	[175..33]
gi\|114538901, gi... - gi\|114706055\|ref\|ZP_01438958.1\| probable heat shock protein [Fulvimarina pelagi HTCC2506], gi\|114538...	192.0	[0..5]	[171..40]
GRPE_SINMW - Protein GrpE OS=Sinorhizobium medicae (strain WSM419) GN=grpE PE=3 SV=1	191.0	[0..6]	[171..40]
GRPE_RHIL3 - Protein GrpE OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=grpE PE=3 SV=1	190.0	[0..6]	[176..38]
gi\|74099845 - gi\|74099845\|gb\|AAZ99131.1\| GrpE [Rhizobium leguminosarum]	190.0	[0..6]	[176..38]
gi\|90420648, gi\|... - gi\|90420648\|ref\|ZP_01228554.1\| grpE chaperone protein [Aurantimonas sp. SI85-9A1], gi\|90334939\|gb\|EA... gi\|90420648, gi\|... - gi\|90420648\|ref\|ZP_01228554.1\| grpE chaperone protein [Aurantimonas sp. SI85-9A1], gi\|90334939\|gb\|EA...	189.0	[0..6]	[162..66]
GRPE_RHIME - Protein GrpE OS=Rhizobium meliloti (strain 1021) GN=grpE PE=3 SV=1 GRPE_RHIME - Protein grpE OS=Rhizobium meliloti GN=grpE PE=3 SV=1	189.0	[0..6]	[173..40]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDETANRIAV LEADNTELKD QMLRVAAEME NLRKRTQRDV QDARAYAITN FARDMLSVSD  60
   61 NLRRALDAIP ADALEADSNL KSLSEGVEMT ERAMLLALER HGVKKLEPEG QKFDPNFHQA 120
  121 MFEVPNPDLP NNTVVQVVQA GYAIGDRVLR PAMVGVSKGG PKVSAENGAS TSEDNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	1dkgA
Description:	Head domain of nucleotide exchange factor GrpE; Coiled-coil domain of nucleotide exchange factor GrpE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits