YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25529274
Organism:	Brucella melitensis
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25529274.

Description	E-value	Query Range	Subject Range
gi\|254688742 - gi\|254688742\|ref\|ZP_05151996.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella abort... gi\|254693225 - gi\|254693225\|ref\|ZP_05155053.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella abort... gi\|225851980, gi... - gi\|225851980\|ref\|YP_002732213.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella meli... gi\|82615457 - gi\|82615457\|emb\|CAJ10426.1\| CDP-alcohol phosphatidyltransferase:CDP-diacylglycerol--serine O-phospha... gi\|163842724, gi... - gi\|163842724\|ref\|YP_001627128.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella suis... gi\|254703796 - gi\|254703796\|ref\|ZP_05165624.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella suis ... gi\|23501345, gi\|... - gi\|23501345\|ref\|NP_697472.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella suis 133... gi\|189019252, gi... - gi\|189023680\|ref\|YP_001934448.1\| CDP-alcohol phosphatidyltransferase [Brucella abortus S19], gi\|1890... gi\|254707827 - gi\|254707827\|ref\|ZP_05169655.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella pinni... gi\|254696870 - gi\|254696870\|ref\|ZP_05158698.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella abort... gi\|254701249 - gi\|254701249\|ref\|ZP_05163077.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella suis ... gi\|254716654 - gi\|254716654\|ref\|ZP_05178465.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella ceti ... gi\|254718622 - gi\|254718622\|ref\|ZP_05180433.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella sp. 8... gi\|254709592 - gi\|254709592\|ref\|ZP_05171403.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella pinni... gi\|161335227, gi... - gi\|161618416\|ref\|YP_001592303.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella cani... gi\|254712992 - gi\|254712992\|ref\|ZP_05174803.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella ceti ... gi\|254729775 - gi\|254729775\|ref\|ZP_05188353.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella abort... gi\|82699356 - gi\|82699356\|ref\|YP_413930.1\| CDP-alcohol phosphatidyltransferase:CDP-diacylglycerol--serine O-phosph... gi\|62195561, gi\|... - gi\|62289429\|ref\|YP_221222.1\| PssA, CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella ab...	187.0	[0..16]	[293..1]
gi\|15156089, gi\|... - gi\|15888405\|ref\|NP_354086.1\| hypothetical protein AGR_C_1962 [Agrobacterium tumefaciens str. C58], g... gi\|25288767 - pir\|\|F97489 phosphatidylserine synthase (AF247564) [imported] - Agrobacterium tumefaciens (strain C5...	186.0	[0..16]	[292..3]
pssA - pssA possible phosphatidylserine synthase 2260031:2260945 forward MW:32769	178.0	[0..11]	[291..7]
gi\|90022183, gi\|... - gi\|90022183\|ref\|YP_528010.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Saccharophagus de...	175.0	[0..13]	[290..11]
gi\|115255946, gi... - gi\|116251298\|ref\|YP_767136.1\| putative phosphatidylserine synthase [Rhizobium leguminosarum bv. vici...	174.0	[0..13]	[277..2]
gi\|78360297, gi\|... - gi\|78367652\|ref\|ZP_00837917.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Shewanella sp. ...	173.0	[0..41]	[288..12]
gi\|15488440 - gi\|15488440\|gb\|AAL01116.1\| phosphatidylserine synthase [Agrobacterium sp. 31749]	173.0	[0..27]	[292..2]
gi\|85694935, gi\|... - gi\|85711022\|ref\|ZP_01042082.1\| Phosphatidylserine synthase [Idiomarina baltica OS145], gi\|85694935\|g...	171.0	[0..31]	[287..7]
gi\|86357048, gi\|... - gi\|86357048\|ref\|YP_468940.1\| CDP-diacylglycerol-serine O-phosphatidyltransferase protein [Rhizobium ...	171.0	[0..16]	[277..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPSGANPWY GSHKPMETPF PPFEPNGRVD ASRGPKLSQI PLRIVVPNVI TVLAICAGLT  60
   61 GIRLAFENRF ELAVAMVLLA AFLDGIDGRI ARMIKGSSKF GAQMDSLADI VNFGVAPALV 120
  121 LYAFMLDQAR SFGWIAALLY AIACCLRLAR FNVMLEDPNR PAWQNNYFIG VPAPAGAMLV 180
  181 LLPVYFGFLG LMPTRALAFG VAAYTVAIAF LLV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	17.552842
Match:	PF01066.12
Description:	No description for PF01066.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [214-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRLPVYNGKS AGSLVRRDIV MPLILCVVIY VALLMSFTWQ TLSLTALAYL AFLPFSLAAW  60
   61 NKREAADRKK AAEEASSGDN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits