YRC Public Data Repository - Protein Structure Prediction

Protein:	RL9_BRUME
Organism:	Brucella melitensis bv. 1 str. 16M
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL9_BRUME.

Description	E-value	Query Range	Subject Range
RL9_BRUAB - 50S ribosomal protein L9 OS=Brucella abortus biovar 1 (strain 9-941) GN=rplI PE=3 SV=1 RL9_BRUA2 - 50S ribosomal protein L9 OS=Brucella abortus (strain 2308) GN=rplI PE=3 SV=1 RL9_BRUAB - 50S ribosomal protein L9 OS=Brucella abortus GN=rplI PE=3 SV=1 gi\|237789762, gi... - gi\|237814925\|ref\|ZP_04593923.1\| ribosomal protein L9 [Brucella abortus str. 2308 A], gi\|237789762\|gb... gi\|254688749 - gi\|254688749\|ref\|ZP_05152003.1\| 50S ribosomal protein L9 [Brucella abortus bv. 6 str. 870] gi\|225618617, gi... - gi\|225626960\|ref\|ZP_03784999.1\| ribosomal protein L9 [Brucella ceti str. Cudo], gi\|225618617\|gb\|EEH1... gi\|254701256 - gi\|254701256\|ref\|ZP_05163084.1\| 50S ribosomal protein L9 [Brucella suis bv. 5 str. 513] gi\|254707820 - gi\|254707820\|ref\|ZP_05169648.1\| 50S ribosomal protein L9 [Brucella pinnipedialis M163/99/10] gi\|254693232 - gi\|254693232\|ref\|ZP_05155060.1\| 50S ribosomal protein L9 [Brucella abortus bv. 3 str. Tulya] gi\|254696878 - gi\|254696878\|ref\|ZP_05158706.1\| 50S ribosomal protein L9 [Brucella abortus bv. 2 str. 86/8/59] gi\|254716661 - gi\|254716661\|ref\|ZP_05178472.1\| 50S ribosomal protein L9 [Brucella ceti M13/05/1] gi\|254729782 - gi\|254729782\|ref\|ZP_05188360.1\| 50S ribosomal protein L9 [Brucella abortus bv. 4 str. 292] gi\|254709599 - gi\|254709599\|ref\|ZP_05171410.1\| 50S ribosomal protein L9 [Brucella pinnipedialis B2/94] RL9_BRUA1 - 50S ribosomal protein L9 OS=Brucella abortus (strain S19) GN=rplI PE=3 SV=1 gi\|254712985 - gi\|254712985\|ref\|ZP_05174796.1\| 50S ribosomal protein L9 [Brucella ceti M644/93/1]	225.0	[0..1]	[189..1]
RL9_BRUSU - 50S ribosomal protein L9 OS=Brucella suis biovar 1 (strain 1330) GN=rplI PE=3 SV=1 RL9_BRUSI - 50S ribosomal protein L9 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplI PE=3 SV=1 RL9_BRUC2 - 50S ribosomal protein L9 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplI PE=3 SV=1 RL9_BRUSU - 50S ribosomal protein L9 OS=Brucella suis GN=rplI PE=3 SV=1	224.0	[0..1]	[189..1]
RL9_RHILO - 50S ribosomal protein L9 OS=Rhizobium loti GN=rplI PE=3 SV=1 RL9_RHILO - 50S ribosomal protein L9 OS=Rhizobium loti (strain MAFF303099) GN=rplI PE=3 SV=1	213.0	[0..1]	[186..1]
RL9_AGRFC - 50S ribosomal protein L9 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rplI PE=3 SV=1 gi\|25523232, gi\|... - pir\|\|AG2710 cultivar specific nodulation protein [imported] - Agrobacterium tumefaciens (strain C58,...	208.0	[0..1]	[188..1]
RL9_BARQU - 50S ribosomal protein L9 OS=Bartonella quintana GN=rplI PE=3 SV=1 RL9_BARQU - 50S ribosomal protein L9 OS=Bartonella quintana (strain Toulouse) GN=rplI PE=3 SV=1	208.0	[0..1]	[188..1]
RL9_RHIL3 - 50S ribosomal protein L9 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplI PE=3 SV=1	204.0	[0..1]	[188..1]
RL9_CHESB - 50S ribosomal protein L9 OS=Chelativorans sp. (strain BNC1) GN=rplI PE=3 SV=1	204.0	[0..1]	[181..1]
RL9_SINMW - 50S ribosomal protein L9 OS=Sinorhizobium medicae (strain WSM419) GN=rplI PE=3 SV=1	204.0	[0..1]	[181..1]
RL9_RHILT - 50S ribosomal protein L9 OS=Rhizobium leguminosarum bv. trifolii GN=rplI PE=3 SV=1	202.0	[0..1]	[188..1]
RL9_RHIME - 50S ribosomal protein L9 OS=Rhizobium meliloti (strain 1021) GN=rplI PE=3 SV=1 RL9_RHIME - 50S ribosomal protein L9 OS=Rhizobium meliloti GN=rplI PE=3 SV=1	202.0	[0..1]	[181..1]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVILLERIG RLGQMGDTVK VKDGYARNFL LPQGKALRAN EANKKKFEGQ RAQLEAQNLE  60
   61 RKNEAQAVAD KLNGESFIVV RSAGETGQLY GSVSTRDIAE IITANGFTLH RNQVELNHPI 120
  121 KTIGLHEVSV SLHPEVQVKV MVNIARSTEE AECQAKGEDL TSIEAIYGIE EQPLSEEVFD 180
  181 DEDEAEDQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1p85F
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	8.6660890573497	bayes_pls_golite062009
structural molecule activity	8.10075613300028	bayes_pls_golite062009
catalytic activity	0.295853503406924	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: