YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25302588
Organism:	Brucella melitensis
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25302588.

Description	E-value	Query Range	Subject Range
gi\|83593100, gi\|... - gi\|83593100\|ref\|YP_426852.1\| protein translocase subunit yajC [Rhodospirillum rubrum ATCC 11170], gi... gi\|48764191 - ref\|ZP_00268743.1\| COG1862: Preprotein translocase subunit YajC [Rhodospirillum rubrum]	159.0	[0..1]	[119..1]
YAJC_BRUSU - Immunogenic membrane protein YajC OS=Brucella suis biovar 1 (strain 1330) GN=yajC PE=3 SV=1 YAJC_BRUAB - Immunogenic membrane protein yajC OS=Brucella abortus GN=yajC PE=3 SV=1 gi\|189019648, gi... - gi\|189024076\|ref\|YP_001934844.1\| YajC [Brucella abortus S19], gi\|189019648\|gb\|ACD72370.1\| YajC [Bruc... gi\|163673884, gi... - gi\|163843161\|ref\|YP_001627565.1\| preprotein translocase, YajC subunit [Brucella suis ATCC 23445], gi... gi\|161335661, gi... - gi\|161618850\|ref\|YP_001592737.1\| preprotein translocase, YajC subunit [Brucella canis ATCC 23365], g... YAJC_BRUME - Immunogenic membrane protein YajC OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 1... gi\|254689140 - gi\|254689140\|ref\|ZP_05152394.1\| hypothetical protein Babob68_02930 [Brucella abortus bv. 6 str. 870] gi\|225852403, gi... - gi\|225852403\|ref\|YP_002732636.1\| preprotein translocase, YajC subunit [Brucella melitensis ATCC 2345... gi\|254697274 - gi\|254697274\|ref\|ZP_05159102.1\| hypothetical protein Babob28_06039 [Brucella abortus bv. 2 str. 86/8... gi\|254693624 - gi\|254693624\|ref\|ZP_05155452.1\| hypothetical protein Babob3T_02949 [Brucella abortus bv. 3 str. Tuly... YAJC_BRUME - Immunogenic membrane protein yajC OS=Brucella melitensis GN=yajC PE=3 SV=1 gi\|254704198 - gi\|254704198\|ref\|ZP_05166026.1\| hypothetical protein Bsuib36_09774 [Brucella suis bv. 3 str. 686] YAJC_BRUAB - Immunogenic membrane protein YajC OS=Brucella abortus biovar 1 (strain 9-941) GN=yajC PE=3 SV=1 gi\|254701654 - gi\|254701654\|ref\|ZP_05163482.1\| hypothetical protein Bsuib55_12461 [Brucella suis bv. 5 str. 513] YAJC_BRUSU - Immunogenic membrane protein yajC OS=Brucella suis GN=yajC PE=3 SV=1 gi\|254730173 - gi\|254730173\|ref\|ZP_05188751.1\| hypothetical protein Babob42_02969 [Brucella abortus bv. 4 str. 292] YAJC_BRUA2 - Immunogenic membrane protein YajC OS=Brucella abortus (strain 2308) GN=yajC PE=3 SV=1	149.0	[0..8]	[120..1]
gi\|27379847, gi\|... - gi\|27379847\|ref\|NP_771376.1\| preprotein tranlocase protein [Bradyrhizobium japonicum USDA 110], gi\|2...	147.0	[0..8]	[119..1]
gi\|92117343, gi\|... - gi\|92117343\|ref\|YP_577072.1\| preprotein translocase, YajC subunit [Nitrobacter hamburgensis X14], gi...	145.0	[0..8]	[120..1]
gi\|148255767, gi... - gi\|78695106\|ref\|ZP_00859618.1\| YajC [Bradyrhizobium sp. BTAi1], gi\|78516780\|gb\|EAP30079.1\| YajC [Bra...	145.0	[0..8]	[117..1]
gi\|49238163, gi\|... - gi\|49475357\|ref\|YP_033398.1\| hypothetical protein BH05640 [Bartonella henselae str. Houston-1], gi\|4...	144.0	[0..8]	[120..1]
gi\|85716185, gi\|... - gi\|85716185\|ref\|ZP_01047160.1\| Preprotein translocase subunit, YajC [Nitrobacter sp. Nb-311A], gi\|85...	143.0	[0..8]	[120..1]
gi\|150027907, gi... - gi\|150396392\|ref\|YP_001326859.1\| preprotein translocase, YajC subunit [Sinorhizobium medicae WSM419]...	143.0	[0..8]	[116..1]
gi\|15965291 - gi\|15965291\|ref\|NP_385644.1\| YAJC protein [Sinorhizobium meliloti 1021] gi\|15074471 - gi\|15074471\|emb\|CAC46117.1\| Probable YajC protein [Sinorhizobium meliloti 1021]	141.0	[0..8]	[116..1]
gi\|75675962, gi\|... - gi\|75675962\|ref\|YP_318383.1\| preprotein translocase subunit, YajC [Nitrobacter winogradskyi Nb-255],...	141.0	[0..8]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSEEFLMFV TPAFAQASGS VVGPDMLMSI LPFILIFVIM YFLIIRPQRT QMKKRQEMLN  60
   61 SVRRGDTVVT GGGIVGKVLK VVDDNELELE IADGVRIRVV RATLMDVRVK GEPVADNKNK 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.657577
Match:	PF02699.6
Description:	No description for PF02699.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.645	N/A	N/A	b.38.1	Sm-like ribonucleoproteins
View	Download	0.610	N/A	N/A	b.113.1	N-terminal domain of MutM-like DNA repair proteins
View	Download	0.580	N/A	N/A	d.110.1	Profilin (actin-binding protein)
View	Download	0.561	N/A	N/A	d.110.1	Profilin (actin-binding protein)
View	Download	0.536	N/A	N/A	d.110.1	Profilin (actin-binding protein)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits