YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17982759, gi\|...
Organism:	Brucella melitensis bv. 1 str. 16M
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17982759, gi|....

Description	E-value	Query Range	Subject Range
gi\|148559927, gi... - gi\|148559927\|ref\|YP_001259088.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella ovis ATCC... gi\|237815589, gi... - gi\|237815589\|ref\|ZP_04594586.1\| ATP-dependent Clp protease adapter protein clpS [Brucella abortus st... gi\|23502048, gi\|... - gi\|23502048\|ref\|NP_698175.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis 1330], g... gi\|225627638, gi... - gi\|225627638\|ref\|ZP_03785675.1\| ATP-dependent Clp protease adapter protein clpS [Brucella ceti str. ... gi\|82700008 - gi\|82700008\|ref\|YP_414582.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella melitensis bi... gi\|62290083, gi\|... - gi\|62290083\|ref\|YP_221876.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus bv. 1... gi\|82616109 - gi\|82616109\|emb\|CAJ11148.1\| Protein of unknown function DUF174 [Brucella melitensis biovar Abortus 2...	209.0	[0..1]	[136..1]
CLPS_BRUME - ATP-dependent Clp protease adapter protein ClpS OS=Brucella melitensis biotype 1 (strain 16M / ATCC ... CLPS_BRUME - ATP-dependent Clp protease adapter protein clpS OS=Brucella melitensis GN=clpS PE=3 SV=2 CLPS_BRUMB - ATP-dependent Clp protease adapter protein ClpS OS=Brucella melitensis biotype 2 (strain ATCC 23457)...	173.0	[0..21]	[136..1]
CLPS_BRUSI - ATP-dependent Clp protease adapter protein ClpS OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN... CLPS_BRUC2 - ATP-dependent Clp protease adapter protein ClpS OS=Brucella canis (strain ATCC 23365 / NCTC 10854) G... gi\|254697528 - gi\|254697528\|ref\|ZP_05159356.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus bv... CLPS_BRUSU - ATP-dependent Clp protease adapter protein ClpS OS=Brucella suis biovar 1 (strain 1330) GN=clpS PE=3... gi\|254704457 - gi\|254704457\|ref\|ZP_05166285.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis bv. 3... CLPS_BRUSU - ATP-dependent Clp protease adapter protein clpS OS=Brucella suis GN=clpS PE=3 SV=2 CLPS_BRUA1 - ATP-dependent Clp protease adapter protein ClpS OS=Brucella abortus (strain S19) GN=clpS PE=3 SV=1 gi\|254689393 - gi\|254689393\|ref\|ZP_05152647.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus bv... gi\|254693877 - gi\|254693877\|ref\|ZP_05155705.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus bv... gi\|254714240 - gi\|254714240\|ref\|ZP_05176051.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti M644/... gi\|254717676 - gi\|254717676\|ref\|ZP_05179487.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti M13/0... gi\|254706649 - gi\|254706649\|ref\|ZP_05168477.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella pinnipedia... gi\|254710244 - gi\|254710244\|ref\|ZP_05172055.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella pinnipedia... gi\|254719232 - gi\|254719232\|ref\|ZP_05181043.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. 83/13] gi\|254730423 - gi\|254730423\|ref\|ZP_05189001.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus bv...	172.0	[0..21]	[136..1]
gi\|68191357, gi\|... - gi\|69277480\|ref\|ZP_00612815.1\| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium sp. BN...	158.0	[0..18]	[136..15]
gi\|126104765, gi... - gi\|126463101\|ref\|YP_001044215.1\| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter sphaer... gi\|221160924, gi... - gi\|221640143\|ref\|YP_002526405.1\| ATP-dependent Clp protease adapter protein clpS [Rhodobacter sphaer... gi\|77464259, gi\|... - gi\|77464259\|ref\|YP_353763.1\| ATP-dependent Clp protease adaptor protein clpS [Rhodobacter sphaeroide...	157.0	[0..31]	[136..1]
RPA3148 - RPA3148 DUF174 3555032:3555430 reverse MW:14742	157.0	[0..18]	[136..16]
CLPS_CAUCR - ATP-dependent Clp protease adapter protein ClpS OS=Caulobacter crescentus GN=clpS PE=1 SV=1 CLPS_CAUCR - ATP-dependent Clp protease adapter protein ClpS OS=Caulobacter crescentus (strain ATCC 19089 / CB15)...	156.0	[0..25]	[136..8]
CLPS_RHOS5 - ATP-dependent Clp protease adapter protein ClpS OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH ...	155.0	[0..29]	[136..6]
gi\|113872897, gi... - gi\|150396335\|ref\|YP_001326802.1\| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium medi...	155.0	[0..27]	[136..8]
gi\|88921906, gi\|... - gi\|88939360\|ref\|ZP_01144809.1\| conserved hypothetical protein [Acidiphilium cryptum JF-5], gi\|889219...	155.0	[0..22]	[136..3]

Back

Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSYILGQAE PYEWASSDRF MRRFNTIMQG KTNGGNGPES GTVVVTRTQP KTRKPSLYRV  60
   61 LLLNDDYTPM EFVVHVLQRF FQKNLDDATR IMLHVHNHGV GECGVFTYEV AETKVSQVMD 120
  121 FARQNQHPLQ CVMEKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1mbuC
Description:	Adaptor protein ClpS (YljA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	1.89742712196707	bayes_pls_golite062009
structural molecule activity	1.6136173890368	bayes_pls_golite062009
binding	1.36469694828004	bayes_pls_golite062009
protein binding	0.723174896490921	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: