YRC Public Data Repository - Protein Structure Prediction

Protein:	RL23_BRUME
Organism:	Brucella melitensis bv. 1 str. 16M
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL23_BRUME.

Description	E-value	Query Range	Subject Range
gi\|76613395 - gi\|76613395\|ref\|XP_871507.1\| PREDICTED: similar to 60S ribosomal protein L23a [Bos taurus]	139.0	[0..2]	[97..279]
gi\|46561796 - gi\|46561796\|gb\|AAT01117.1\| rpL23-ScFv fusion protein [rpL23-fusion expression vector pScFV]	132.0	[0..1]	[96..2]
RL23_CHESB - 50S ribosomal protein L23 OS=Chelativorans sp. (strain BNC1) GN=rplW PE=3 SV=1	129.0	[0..1]	[97..1]
gi\|46561792 - gi\|46561792\|gb\|AAT01114.1\| rpL23-SA fusion protein [rpL23-fusion expression vector pSA]	127.0	[0..1]	[96..2]
gi\|254706588 - gi\|254706588\|ref\|ZP_05168416.1\| 50S ribosomal protein L23 [Brucella pinnipedialis M163/99/10] gi\|254710302 - gi\|254710302\|ref\|ZP_05172113.1\| 50S ribosomal protein L23 [Brucella pinnipedialis B2/94] gi\|254701972 - gi\|254701972\|ref\|ZP_05163800.1\| 50S ribosomal protein L23 [Brucella suis bv. 5 str. 513] gi\|254704516 - gi\|254704516\|ref\|ZP_05166344.1\| 50S ribosomal protein L23 [Brucella suis bv. 3 str. 686] gi\|254719289 - gi\|254719289\|ref\|ZP_05181100.1\| 50S ribosomal protein L23 [Brucella sp. 83/13] RL23_BRUO2 - 50S ribosomal protein L23 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplW PE=3 SV... gi\|254714299 - gi\|254714299\|ref\|ZP_05176110.1\| 50S ribosomal protein L23 [Brucella ceti M644/93/1] RL23_BRUC2 - 50S ribosomal protein L23 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplW PE=3 SV=1 gi\|254717736 - gi\|254717736\|ref\|ZP_05179547.1\| 50S ribosomal protein L23 [Brucella ceti M13/05/1] RL23_BRUSU - 50S ribosomal protein L23 OS=Brucella suis biovar 1 (strain 1330) GN=rplW PE=3 SV=1 RL23_BRUSU - 50S ribosomal protein L23 OS=Brucella suis GN=rplW PE=3 SV=1 gi\|225617706, gi... - gi\|225627701\|ref\|ZP_03785738.1\| 50S ribosomal protein L23 [Brucella ceti str. Cudo], gi\|225617706\|gb...	127.0	[0..1]	[97..1]
gi\|88787925, gi\|... - gi\|88807886\|ref\|ZP_01123397.1\| 50S ribosomal protein L23 [Synechococcus sp. WH 7805], gi\|88787925\|gb...	126.0	[0..5]	[94..8]
RL23_ROSS1 - 50S ribosomal protein L23 OS=Roseiflexus sp. (strain RS-1) GN=rplW PE=3 SV=1	126.0	[0..4]	[96..1]
gi\|114539271, gi... - gi\|114704486\|ref\|ZP_01437394.1\| 50S ribosomal protein L23 [Fulvimarina pelagi HTCC2506], gi\|11453927...	125.0	[0..1]	[97..1]
RL23_BRUA1 - 50S ribosomal protein L23 OS=Brucella abortus (strain S19) GN=rplW PE=3 SV=1 gi\|237788948, gi... - gi\|237815650\|ref\|ZP_04594647.1\| 50S ribosomal protein L23 [Brucella abortus str. 2308 A], gi\|2377889... gi\|254697586 - gi\|254697586\|ref\|ZP_05159414.1\| 50S ribosomal protein L23 [Brucella abortus bv. 2 str. 86/8/59] gi\|254730480 - gi\|254730480\|ref\|ZP_05189058.1\| 50S ribosomal protein L23 [Brucella abortus bv. 4 str. 292] RL23_BRUAB - 50S ribosomal protein L23 OS=Brucella abortus biovar 1 (strain 9-941) GN=rplW PE=3 SV=1 gi\|254689451 - gi\|254689451\|ref\|ZP_05152705.1\| 50S ribosomal protein L23 [Brucella abortus bv. 6 str. 870] RL23_BRUA2 - 50S ribosomal protein L23 OS=Brucella abortus (strain 2308) GN=rplW PE=3 SV=1 gi\|254693936 - gi\|254693936\|ref\|ZP_05155764.1\| 50S ribosomal protein L23 [Brucella abortus bv. 3 str. Tulya] RL23_BRUAB - 50S ribosomal protein L23 OS=Brucella abortus GN=rplW PE=3 SV=1	125.0	[0..1]	[97..1]
RL23_RHILO - 50S ribosomal protein L23 OS=Rhizobium loti (strain MAFF303099) GN=rplW PE=3 SV=1 RL23_RHILO - 50S ribosomal protein L23 OS=Rhizobium loti GN=rplW PE=3 SV=1	125.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLRHYDVI VSPVITEKST MVSEHNQVVF NVARKATKPE IKAAVEALFG VKVTAVNTAV  60
   61 CKGKVKRFRG LVGRQSDVKK AIVTLAEGQS IDVSTGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.30103
Match:	1nkwR
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.49719655437057	bayes_pls_golite062009
structural molecule activity	8.91971353502188	bayes_pls_golite062009
RNA binding	2.08123706428867	bayes_pls_golite062009
binding	1.25515792429002	bayes_pls_golite062009
nucleic acid binding	0.975441164470499	bayes_pls_golite062009
protein binding	0.535333601277892	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: