YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17982684, gi\|...
Organism:	Brucella melitensis bv. 1 str. 16M
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17982684, gi|....

Description	E-value	Query Range	Subject Range
gi\|48765753 - ref\|ZP_00270303.1\| COG0244: Ribosomal protein L10 [Rhodospirillum rubrum] RL10_RHORT - 50S ribosomal protein L10 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 43...	188.0	[0..37]	[208..1]
gi\|68245303, gi\|... - gi\|69260659\|ref\|ZP_00608127.1\| Ribosomal protein L10 [Magnetococcus sp. MC-1], gi\|68245303\|gb\|EAN274...	187.0	[0..37]	[208..1]
gi\|113875391, gi... - gi\|150396197\|ref\|YP_001326664.1\| 50S ribosomal protein L10 [Sinorhizobium medicae WSM419], gi\|150027...	184.0	[0..20]	[208..6]
gi\|114778901, gi... - gi\|114778901\|ref\|ZP_01453698.1\| 50S ribosomal protein L10 [Mariprofundus ferrooxydans PV-1], gi\|1145...	181.0	[0..37]	[208..1]
gi\|114704474, gi... - gi\|114704474\|ref\|ZP_01437382.1\| 50S ribosomal protein L10 [Fulvimarina pelagi HTCC2506], gi\|11453925...	181.0	[0..37]	[208..1]
RL10_RHIME - 50S ribosomal protein L10 OS=Rhizobium meliloti (strain 1021) GN=rplJ PE=3 SV=1 RL10_RHIME - 50S ribosomal protein L10 OS=Rhizobium meliloti GN=rplJ PE=3 SV=1	179.0	[0..37]	[208..1]
RL10_BRUME - 50S ribosomal protein L10 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN... RL10_BRUA1 - 50S ribosomal protein L10 OS=Brucella abortus (strain S19) GN=rplJ PE=3 SV=1 RL10_BRUC2 - 50S ribosomal protein L10 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplJ PE=3 SV=1 RL10_BRUME - 50S ribosomal protein L10 OS=Brucella melitensis GN=rplJ PE=3 SV=2 gi\|254689462 - gi\|254689462\|ref\|ZP_05152716.1\| 50S ribosomal protein L10 [Brucella abortus bv. 6 str. 870] gi\|254697599 - gi\|254697599\|ref\|ZP_05159427.1\| 50S ribosomal protein L10 [Brucella abortus bv. 2 str. 86/8/59] RL10_BRUMB - 50S ribosomal protein L10 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplJ PE=3 SV=1 gi\|254730491 - gi\|254730491\|ref\|ZP_05189069.1\| 50S ribosomal protein L10 [Brucella abortus bv. 4 str. 292] RL10_BRUA2 - 50S ribosomal protein L10 OS=Brucella abortus (strain 2308) GN=rplJ PE=3 SV=1 gi\|254704527 - gi\|254704527\|ref\|ZP_05166355.1\| 50S ribosomal protein L10 [Brucella suis bv. 3 str. 686] gi\|82616179 - gi\|82616179\|emb\|CAJ11222.1\| Ribosomal protein L10:Eubacterial ribosomal protein L10 [Brucella melite... gi\|254719300 - gi\|254719300\|ref\|ZP_05181111.1\| 50S ribosomal protein L10 [Brucella sp. 83/13]	179.0	[0..37]	[208..1]
RL10_BRUSU - 50S ribosomal protein L10 OS=Brucella suis GN=rplJ PE=3 SV=1 RL10_BRUSU - 50S ribosomal protein L10 OS=Brucella suis biovar 1 (strain 1330) GN=rplJ PE=3 SV=1	179.0	[0..37]	[208..1]
RL10_BRUAB - 50S ribosomal protein L10 OS=Brucella abortus biovar 1 (strain 9-941) GN=rplJ PE=3 SV=3 RL10_BRUAB - 50S ribosomal protein L10 OS=Brucella abortus GN=rplJ PE=3 SV=3	178.0	[0..37]	[208..1]
gi\|90417772, gi\|... - gi\|90417772\|ref\|ZP_01225684.1\| ribosomal protein L10 [Aurantimonas sp. SI85-9A1], gi\|90337444\|gb\|EAS... gi\|90417772, gi\|... - gi\|90417772\|ref\|ZP_01225684.1\| ribosomal protein L10 [Aurantimonas sp. SI85-9A1], gi\|90337444\|gb\|EAS...	178.0	[0..37]	[208..1]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELKGTGSSN VGLTVKFVRQ RQPGRANDGP VNWRETVDRA EKREFVAWLN GAFKESGSVV  60
   61 VAHYTGLTVA QMSDLRSKMR DAGGSVKVAK NRLAKIALQG TESEGIADLF TGQTVVAYAN 120
  121 DPITAPKVAV EFAKANDKLV ILGGAMGATT LNADGVKSLA SLPSLDELRA KLVGMIQTPA 180
  181 QRLAVLTSAP AGQIARVIGA HARKNEAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1zavA
Description:	Ribosomal Protein L10-L12(NTD) Complex, Space Group P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.21399440705185	bayes_pls_golite062009
structural molecule activity	8.64272477066313	bayes_pls_golite062009
binding	0.883379158418688	bayes_pls_golite062009
protein binding	0.184314459922274	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: