YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25304823
Organism:	Brucella melitensis
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25304823.

Description	E-value	Query Range	Subject Range
gi\|225617758, gi... - gi\|225627753\|ref\|ZP_03785790.1\| Precorrin-8X methylmutase [Brucella ceti str. Cudo], gi\|225617758\|gb... gi\|23348128, gi\|... - gi\|23502163\|ref\|NP_698290.1\| precorrin-8X methylmutase [Brucella suis 1330], gi\|23348128\|gb\|AAN30205... gi\|254714344 - gi\|254714344\|ref\|ZP_05176155.1\| precorrin-8X methylmutase [Brucella ceti M644/93/1] gi\|254710348 - gi\|254710348\|ref\|ZP_05172159.1\| precorrin-8X methylmutase [Brucella pinnipedialis B2/94] gi\|254704562 - gi\|254704562\|ref\|ZP_05166390.1\| precorrin-8X methylmutase [Brucella suis bv. 3 str. 686] gi\|254702021 - gi\|254702021\|ref\|ZP_05163849.1\| precorrin-8X methylmutase [Brucella suis bv. 5 str. 513] gi\|254717243 - gi\|254717243\|ref\|ZP_05179054.1\| precorrin-8X methylmutase [Brucella ceti M13/05/1] gi\|161336049, gi... - gi\|161619238\|ref\|YP_001593125.1\| precorrin-8X methylmutase [Brucella canis ATCC 23365], gi\|161336049... gi\|163843550, gi... - gi\|163843550\|ref\|YP_001627954.1\| precorrin-8X methylmutase [Brucella suis ATCC 23445], gi\|163674273\|...	307.0	[0..1]	[208..1]
gi\|237815700, gi... - gi\|237815700\|ref\|ZP_04594697.1\| Precorrin-8X methylmutase [Brucella abortus str. 2308 A], gi\|2377889... gi\|189019999, gi... - gi\|189024427\|ref\|YP_001935195.1\| Precorrin-8X methylmutase CbiC/CobH [Brucella abortus S19], gi\|1890... gi\|254697635 - gi\|254697635\|ref\|ZP_05159463.1\| precorrin-8X methylmutase [Brucella abortus bv. 2 str. 86/8/59] gi\|254706541 - gi\|254706541\|ref\|ZP_05168369.1\| precorrin-8X methylmutase [Brucella pinnipedialis M163/99/10] gi\|254730525 - gi\|254730525\|ref\|ZP_05189103.1\| precorrin-8X methylmutase [Brucella abortus bv. 4 str. 292] gi\|62290193, gi\|... - gi\|62290193\|ref\|YP_221986.1\| precorrin-8X methylmutase [Brucella abortus bv. 1 str. 9-941], gi\|62196... gi\|82700114 - gi\|82700114\|ref\|YP_414688.1\| precorrin-8X methylmutase [Brucella melitensis biovar Abortus 2308] gi\|82616215 - gi\|82616215\|emb\|CAJ11261.1\| Precorrin-8X methylmutase CbiC/CobH [Brucella melitensis biovar Abortus ...	305.0	[0..1]	[208..1]
gi\|28871991, gi\|... - gi\|28871991\|ref\|NP_794610.1\| precorrin-8X methylmutase [Pseudomonas syringae pv. tomato str. DC3000]... gi\|213927333, gi... - gi\|213967990\|ref\|ZP_03396136.1\| precorrin-8X methylmutase [Pseudomonas syringae pv. tomato T1], gi\|2... tr\|Q87VQ9\|Q87VQ9... - Precorrin-8X methylmutase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=cobH PE=4 SV=1	299.0	[0..1]	[208..1]
gi\|23470738, gi\|... - gi\|66047643\|ref\|YP_237484.1\| precorrin-8X methylmutase [Pseudomonas syringae pv. syringae B728a], gi...	298.0	[0..1]	[208..1]
gi\|71737219, gi\|... - gi\|71737219\|ref\|YP_276575.1\| precorrin-8X methylmutase [Pseudomonas syringae pv. phaseolicola 1448A]...	297.0	[0..1]	[208..1]
gi\|91691514, gi\|... - gi\|91778854\|ref\|YP_554062.1\| precorrin-8X methylmutase [Burkholderia xenovorans LB400], gi\|91691514\|...	291.0	[0..1]	[193..1]
gi\|72610256, gi\|... - gi\|74016785\|ref\|ZP_00687410.1\| Precorrin-8X methylmutase [Burkholderia ambifaria AMMD], gi\|72610256\|...	285.0	[0..1]	[193..1]
gi\|75909078, gi\|... - gi\|75909078\|ref\|YP_323374.1\| precorrin-8X methylmutase [Anabaena variabilis ATCC 29413], gi\|75702803...	284.0	[0..1]	[193..525]
gi\|116255832, gi... - gi\|116255832\|ref\|YP_771665.1\| precorrin-8X methylmutase [Rhizobium leguminosarum bv. viciae 3841], g...	284.0	[0..3]	[204..5]
gi\|254252369, gi... - gi\|84361803\|ref\|ZP_00986448.1\| COG2082: Precorrin isomerase [Burkholderia dolosa AUO158], gi\|2542523...	284.0	[0..1]	[193..1]

Back

Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDYIRDGQA IYDRSFAIIR AEADLRHIPA DLEKLAVRVI HACGMVDVAN DLAFSEGAGK  60
   61 AGRNALLAGA PILCDARMVA EGITRSRLPA DNRVIYTLGD PSVPELAKKI GNTRSAAALD 120
  121 LWLPHIEGSI VAIGNAPTAL FRLFELLDAG APKPALIIGM PVGFVGAAES KDELAANSRG 180
  181 VPYVIVRGRR GGSAMTAAAV NALASERE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.69897
Match:	1f2vA
Description:	Precorrin-8x methylmutase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
precorrin-8X methylmutase activity	4.67808433120253	bayes_pls_golite062009
intramolecular transferase activity, transferring acyl groups	3.40017406781391	bayes_pls_golite062009
catalytic activity	1.50868196926865	bayes_pls_golite062009
isomerase activity	0.0116975252756449	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: