YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17986764, gi\|...
Organism:	Brucella melitensis bv. 1 str. 16M
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17986764, gi|....

Description	E-value	Query Range	Subject Range
RL25_CUPMC - 50S ribosomal protein L25 OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 /...	254.0	[0..31]	[230..1]
RL25_BARBK - 50S ribosomal protein L25 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplY PE=3 SV=1	253.0	[0..27]	[230..1]
gi\|86282729, gi\|... - gi\|86358627\|ref\|YP_470519.1\| 50S ribosomal protein L25 [Rhizobium etli CFN 42], gi\|86282729\|gb\|ABC91...	252.0	[0..18]	[215..21]
gi\|116253213, gi... - gi\|116253213\|ref\|YP_769051.1\| 50S ribosomal protein L25/general stress protein Ctc [Rhizobium legumi...	251.0	[0..29]	[228..4]
RL25_BRUA1 - 50S ribosomal protein L25 OS=Brucella abortus (strain S19) GN=rplY PE=3 SV=1 RL25_BRUME - 50S ribosomal protein L25 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN... RL25_BRUA2 - 50S ribosomal protein L25 OS=Brucella abortus (strain 2308) GN=rplY PE=3 SV=1 gi\|254689721 - gi\|254689721\|ref\|ZP_05152975.1\| 50S ribosomal protein L25/general stress protein Ctc [Brucella abort... RL25_BRUMB - 50S ribosomal protein L25 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplY PE=3 SV=1 gi\|254697864 - gi\|254697864\|ref\|ZP_05159692.1\| 50S ribosomal protein L25/general stress protein Ctc [Brucella abort... RL25_BRUSU - 50S ribosomal protein L25 OS=Brucella suis biovar 1 (strain 1330) GN=rplY PE=3 SV=1 gi\|254694210 - gi\|254694210\|ref\|ZP_05156038.1\| 50S ribosomal protein L25/general stress protein Ctc [Brucella abort... RL25_BRUAB - 50S ribosomal protein L25 OS=Brucella abortus biovar 1 (strain 9-941) GN=rplY PE=3 SV=1 gi\|254708201 - gi\|254708201\|ref\|ZP_05170029.1\| 50S ribosomal protein L25/general stress protein Ctc [Brucella pinni... gi\|254702253 - gi\|254702253\|ref\|ZP_05164081.1\| 50S ribosomal protein L25/general stress protein Ctc [Brucella suis ... gi\|254730754 - gi\|254730754\|ref\|ZP_05189332.1\| 50S ribosomal protein L25/general stress protein Ctc [Brucella abort... gi\|254710571 - gi\|254710571\|ref\|ZP_05172382.1\| 50S ribosomal protein L25/general stress protein Ctc [Brucella pinni... RL25_BRUAB - 50S ribosomal protein L25 OS=Brucella abortus GN=rplY PE=3 SV=1 RL25_BRUME - 50S ribosomal protein L25 OS=Brucella melitensis GN=rplY PE=3 SV=2 RL25_BRUSU - 50S ribosomal protein L25 OS=Brucella suis GN=rplY PE=3 SV=1 RL25_BRUSI - 50S ribosomal protein L25 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplY PE=3 SV=1	251.0	[0..27]	[233..1]
RL25_RHILO - 50S ribosomal protein L25 OS=Rhizobium loti GN=rplY PE=3 SV=1 RL25_RHILO - 50S ribosomal protein L25 OS=Rhizobium loti (strain MAFF303099) GN=rplY PE=3 SV=1	249.0	[0..28]	[222..3]
RL25_NOVAD - 50S ribosomal protein L25 OS=Novosphingobium aromaticivorans (strain DSM 12444 / F199) GN=rplY PE=3 ...	246.0	[0..27]	[221..1]
RL25_BARHE - 50S ribosomal protein L25 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rplY... RL25_BARHE - 50S ribosomal protein L25 OS=Bartonella henselae GN=rplY PE=3 SV=1	244.0	[0..27]	[221..1]
RL25_SPHAL - 50S ribosomal protein L25 OS=Sphingopyxis alaskensis GN=rplY PE=3 SV=1 RL25_SPHAL - 50S ribosomal protein L25 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) GN=rplY...	244.0	[0..27]	[232..1]
gi\|83746829, gi\|... - gi\|83746829\|ref\|ZP_00943876.1\| LSU ribosomal protein L25P [Ralstonia solanacearum UW551], gi\|8372641... gi\|206593627, gi... - gi\|207742239\|ref\|YP_002258631.1\| 50s ribosomal protein l25 (general stress protein ctc) [Ralstonia s... gi\|207727835, gi... - gi\|207727835\|ref\|YP_002256229.1\| 50s ribosomal protein l25 [Ralstonia solanacearum MolK2], gi\|206591...	243.0	[0..31]	[218..1]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METGFRIRSG VDNTASDTPV TLKGNAMSET YVLKADLRTR VGKGSSRELR RNGQIPAVIY  60
   61 GDKQEPLAIA VSYKEIFYKI HGGGFKTTVA TIEVDGKKIQ VLPKDYQLDP VRDFPQHVDF 120
  121 LRVSAKSVVH VNVPVHFKNE EAAPGIKRGG VLNVVRHDVE LIVPANAIPE ALEIDLSGLE 180
  181 IGDSVHISAV KLPKGATPAI QDRDFTIATI AAPAGLKSEE NAEGAAEEAK DGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	1nkwT
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.1665304403994	bayes_pls_golite062009
structural molecule activity	8.59459543213994	bayes_pls_golite062009
5S rRNA binding	4.70443838393432	bayes_pls_golite062009
rRNA binding	4.2844525979436	bayes_pls_golite062009
RNA binding	4.0807034963688	bayes_pls_golite062009
nucleic acid binding	2.64595792001211	bayes_pls_golite062009
binding	2.0872529467434	bayes_pls_golite062009
protein binding	0.155133084870595	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: