YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25318120
Organism:	Brucella melitensis
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25318120.

Description	E-value	Query Range	Subject Range
Y2326_GEODF - Probable transcriptional regulatory protein Geob_2326 OS=Geobacter daltonii (strain DSM 22248 / JCM ...	376.0	[0..8]	[253..1]
Y479_MAGMM - Probable transcriptional regulatory protein Mmc1_0479 OS=Magnetococcus marinus (strain ATCC BAA-1437...	374.0	[0..8]	[255..1]
Y743_GEOMG - Probable transcriptional regulatory protein Gmet_0743 OS=Geobacter metallireducens (strain GS-15 / A...	374.0	[0..8]	[253..1]
gi\|189020378, gi... - gi\|189024806\|ref\|YP_001935574.1\| Protein of unknown function DUF28 [Brucella abortus S19], gi\|189020... Y1769_BRUMB - Probable transcriptional regulatory protein BMEA_A1769 OS=Brucella melitensis biotype 2 (strain ATCC... gi\|254694376 - gi\|254694376\|ref\|ZP_05156204.1\| hypothetical protein Babob3T_06897 [Brucella abortus bv. 3 str. Tuly... Y1717_BRUSU - Probable transcriptional regulatory protein BR1717/BS1330_I1711 OS=Brucella suis biovar 1 (strain 13... Y3692_BRUSI - Probable transcriptional regulatory protein BSUIS_B1192 OS=Brucella suis (strain ATCC 23445 / NCTC 1... gi\|254689884 - gi\|254689884\|ref\|ZP_05153138.1\| hypothetical protein Babob68_06894 [Brucella abortus bv. 6 str. 870] gi\|254700376 - gi\|254700376\|ref\|ZP_05162204.1\| hypothetical protein Bsuib55_05899 [Brucella suis bv. 5 str. 513] gi\|254698034 - gi\|254698034\|ref\|ZP_05159862.1\| hypothetical protein Babob28_10083 [Brucella abortus bv. 2 str. 86/8... Y1755_BRUC2 - Probable transcriptional regulatory protein BCAN_A1755 OS=Brucella canis (strain ATCC 23365 / NCTC 1... Y321_BRUME - Probable transcriptional regulatory protein BMEI0321 OS=Brucella melitensis biotype 1 (strain 16M / ... gi\|254708417 - gi\|254708417\|ref\|ZP_05170245.1\| hypothetical protein BpinM_16060 [Brucella pinnipedialis M163/99/10] Y321_BRUME - UPF0082 protein BMEI0321 OS=Brucella melitensis GN=BMEI0321 PE=3 SV=1 gi\|254703494 - gi\|254703494\|ref\|ZP_05165322.1\| hypothetical protein Bsuib36_06134 [Brucella suis bv. 3 str. 686] gi\|254714575 - gi\|254714575\|ref\|ZP_05176386.1\| hypothetical protein BcetM6_14802 [Brucella ceti M644/93/1] gi\|254708730 - gi\|254708730\|ref\|ZP_05170541.1\| hypothetical protein BpinB_00426 [Brucella pinnipedialis B2/94] Y1702_BRUAB - UPF0082 protein BruAb1_1702 OS=Brucella abortus GN=BruAb1_1702 PE=3 SV=1 gi\|254719718 - gi\|254719718\|ref\|ZP_05181529.1\| hypothetical protein Bru83_09273 [Brucella sp. 83/13] gi\|254717472 - gi\|254717472\|ref\|ZP_05179283.1\| hypothetical protein BcetM_13926 [Brucella ceti M13/05/1] gi\|254730918 - gi\|254730918\|ref\|ZP_05189496.1\| hypothetical protein Babob42_06922 [Brucella abortus bv. 4 str. 292] Y1660_BRUO2 - Probable transcriptional regulatory protein BOV_1660 OS=Brucella ovis (strain ATCC 25840 / 63/290 / ... YH17_BRUSU, Y171... - (P67174) Hypothetical UPF0082 protein BR1717, UPF0082 protein BR1717 OS=Brucella suis GN=BR1717 PE=3... Y1729_BRUA2 - Probable transcriptional regulatory protein BAB1_1729 OS=Brucella abortus (strain 2308) GN=BAB1_1729... Y1702_BRUAB - Probable transcriptional regulatory protein BruAb1_1702 OS=Brucella abortus biovar 1 (strain 9-941) ...	373.0	[0..8]	[255..1]
Y1072_RUEPO - Probable transcriptional regulatory protein SPO1072 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 1... Y1072_SILPO - UPF0082 protein SPO1072 OS=Silicibacter pomeroyi GN=SPO1072 PE=3 SV=1	373.0	[0..8]	[253..1]
gi\|84703574, gi\|... - gi\|84703574\|ref\|ZP_01017402.1\| hypothetical protein PB2503_07719 [Parvularcula bermudensis HTCC2503]...	372.0	[0..8]	[255..1]
gi\|114762980, gi... - gi\|114762980\|ref\|ZP_01442410.1\| hypothetical protein R2601_20911 [Roseovarius sp. HTCC2601], gi\|1145...	372.0	[0..8]	[253..1]
YA74_GEOSL, Y107... - (P62036) Hypothetical UPF0082 protein GSU1074, UPF0082 protein GSU1074 OS=Geobacter sulfurreducens G... Y1074_GEOSL - Probable transcriptional regulatory protein GSU1074 OS=Geobacter sulfurreducens (strain ATCC 51573 /...	372.0	[0..8]	[253..1]
Y4410_PSEPF - Probable transcriptional regulatory protein Pfl01_4410 OS=Pseudomonas fluorescens (strain Pf0-1) GN=...	370.0	[0..8]	[253..1]
Y2308_RHOS1 - Probable transcriptional regulatory protein Rsph17029_2308 OS=Rhodobacter sphaeroides (strain ATCC 1...	370.0	[0..8]	[255..1]

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Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNENRGPMAG HSQFKNIMHR KGRQDAVRSK MFSKLAREIT VAAKQGLPDP AMNPRLRLAI  60
   61 QNAKAQSMPK DNIERAIKKA AGNDGENYDE VRYEGRGPGG VSVIVEALTD NRNRTASNVR 120
  121 AAFTKSGGSL GETGSVSFMF DRVGEIVYKP EAGDADKVME AAIEAGAEDV QSGEDGHVIL 180
  181 CAFEDIGEVS KALEAALGEA ESIKTIWKPQ TNTELDEEKA RSVLKLLSVL EDDDDVQNVY 240
  241 TNFEVSDEVM EKLSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	101.0
Match:	1lfpA
Description:	Hypothetical protein aq1575
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits