YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17982086, gi\|...
Organism:	Brucella melitensis bv. 1 str. 16M
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17982086, gi|....

Description	E-value	Query Range	Subject Range
gi\|5712722 - gi\|5712722\|gb\|AAD47625.1\| unknown [Pseudomonas sp. BG33R]	169.0	[0..15]	[138..75]
gi\|71735895, gi\|... - gi\|71735895\|ref\|YP_273005.1\| ribosomal protein L21 [Pseudomonas syringae pv. phaseolicola 1448A], gi...	159.0	[0..16]	[138..21]
gi\|26987424, gi\|... - gi\|26987424\|ref\|NP_742849.1\| 50S ribosomal protein L21 [Pseudomonas putida KT2440], gi\|24982083\|gb\|A...	152.0	[0..24]	[138..50]
gi\|22124586, gi\|... - gi\|22124586\|ref\|NP_668009.1\| 50S ribosomal protein L21 [Yersinia pestis KIM], gi\|21957388\|gb\|AAM8426... gi\|45435282, gi\|... - gi\|45440425\|ref\|NP_991964.1\| 50S ribosomal protein L21 [Yersinia pestis biovar Microtus str. 91001],...	151.0	[0..26]	[138..3]
gi\|7473815 - pir\|\|F75560 ribosomal protein L21 - Deinococcus radiodurans (strain R1) gi\|6457752, gi\|1... - gi\|6457752\|gb\|AAF09679.1\|AE001872_2 ribosomal protein L21 [Deinococcus radiodurans R1], gi\|15805127\|...	149.0	[0..12]	[137..45]
gi\|90338097, gi\|... - gi\|90418425\|ref\|ZP_01226337.1\| ribosomal protein L21 [Aurantimonas sp. SI85-9A1], gi\|90338097\|gb\|EAS... gi\|90338097, gi\|... - gi\|90418425\|ref\|ZP_01226337.1\| ribosomal protein L21 [Aurantimonas sp. SI85-9A1], gi\|90338097\|gb\|EAS...	148.0	[0..40]	[144..1]
gi\|78220139, gi\|... - gi\|78357734\|ref\|YP_389183.1\| 50S ribosomal protein L21P [Desulfovibrio desulfuricans subsp. desulfur...	148.0	[0..22]	[138..30]
RL21_IDILO - 50S ribosomal protein L21 OS=Idiomarina loihiensis GN=rplU PE=3 SV=1 RL21_IDILO - 50S ribosomal protein L21 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=rplU...	146.0	[0..40]	[137..1]
RL21_RHOSK - 50S ribosomal protein L21 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rplU PE=3 SV=1 RL21_RHOS4 - 50S ribosomal protein L21 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 15...	146.0	[0..40]	[165..1]
gi\|39577383, gi\|... - gi\|42525172\|ref\|NP_970552.1\| 50S ribosomal protein L21 [Bdellovibrio bacteriovorus HD100], gi\|395773...	146.0	[0..37]	[176..15]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQSGAKPIH QPTDKKTAHR LDANVAGNES RTEQPKGQQM FAVIKTGGKQ YRVAANDLIK  60
   61 VEKVAGEAGD IVEFAEVLMV GSTIGAPTVA GALVTAEVVE QGRGRKVIAF KKRRRQNSKR 120
  121 TRGHRQELTT IRISEILTDG AKPSKKAAEK KAPKADAAEG EAAKPKKAAP KKAAAKAESA 180
  181 E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1vs6R
Description:	No description for 1vs6R was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.85836545072418	bayes_pls_golite062009
structural molecule activity	9.28432670986445	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: