YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17982052, gi\|...
Organism:	Brucella melitensis bv. 1 str. 16M
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17982052, gi|....

Description	E-value	Query Range	Subject Range
gi\|254700536 - gi\|254700536\|ref\|ZP_05162364.1\| hypothetical protein Bsuib55_06741 [Brucella suis bv. 5 str. 513] gi\|254704907 - gi\|254704907\|ref\|ZP_05166735.1\| hypothetical protein Bsuib36_13510 [Brucella suis bv. 3 str. 686] gi\|23502744, gi\|... - gi\|23502744\|ref\|NP_698871.1\| hypothetical protein BR1892 [Brucella suis 1330], gi\|23348761\|gb\|AAN307... gi\|225628093, gi... - gi\|225628093\|ref\|ZP_03786128.1\| Hypothetical protein, conserved [Brucella ceti str. Cudo], gi\|225616... gi\|254715958 - gi\|254715958\|ref\|ZP_05177769.1\| hypothetical protein BcetM_05907 [Brucella ceti M13/05/1] gi\|254708885 - gi\|254708885\|ref\|ZP_05170696.1\| hypothetical protein BpinB_01213 [Brucella pinnipedialis B2/94] gi\|254713691 - gi\|254713691\|ref\|ZP_05175502.1\| hypothetical protein BcetM6_10110 [Brucella ceti M644/93/1]	139.0	[0..1]	[218..1]
gi\|62196881, gi\|... - gi\|62290749\|ref\|YP_222542.1\| hypothetical protein BruAb1_1869 [Brucella abortus bv. 1 str. 9-941], g... gi\|82700660 - gi\|82700660\|ref\|YP_415234.1\| SAM-binding motif-containing protein [Brucella melitensis biovar Abortu... gi\|254696151 - gi\|254696151\|ref\|ZP_05157979.1\| SAM (and some other nucleotide) binding motif [Brucella abortus bv. ... gi\|82616761 - gi\|82616761\|emb\|CAJ11848.1\| SAM (and some other nucleotide) binding motif [Brucella melitensis biova... gi\|254731069 - gi\|254731069\|ref\|ZP_05189647.1\| SAM (and some other nucleotide) binding motif [Brucella abortus bv. ... gi\|189024962, gi... - gi\|189024962\|ref\|YP_001935730.1\| SAM (and some other nucleotide) binding motif [Brucella abortus S19... gi\|237816255, gi... - gi\|237816255\|ref\|ZP_04595248.1\| Hypothetical protein, conserved [Brucella abortus str. 2308 A], gi\|2...	139.0	[0..1]	[218..1]
PEAM1_ARATH - Phosphoethanolamine N-methyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=1 SV=1	120.0	[0..19]	[216..226]
gi\|83309871, gi\|... - gi\|83309871\|ref\|YP_420135.1\| methyltransferase [Magnetospirillum magneticum AMB-1], gi\|82944712\|dbj\|...	119.0	[0..5]	[218..7]
UBIG_COXBU - Ubiquinone biosynthesis O-methyltransferase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I... UBIG_COXB2 - Ubiquinone biosynthesis O-methyltransferase OS=Coxiella burnetii (strain CbuG_Q212) GN=ubiG PE=3 SV=... UBIG_COXBR - Ubiquinone biosynthesis O-methyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN... UBIG_COXBU - 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii GN=ubiG PE=3 SV=1	118.0	[0..26]	[217..10]

Back

Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDPAHKSAR DFIVANTGLQ APPHVPEICL HLADEAHELW HKTEEELATI GLPPPFWAFA  60
   61 WAGGQGVARY ILDHPECVAG KRVLDFASGS GLVAIAAMKA GAKNILACDI DPFALPAIEI 120
  121 NAAANDVAIS VTPEDLIGQD RGWDMILAGD VFYEKPLADR LIPWFTKLAE RGARIIVGDP 180
  181 GRAYLPKERL QQLAIYTVPV TRALEDAEVK CTTVWAFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.045757
Match:	1tpyA
Description:	Structure of the cyclopropane synthase MmaA2 from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity	0.569065423404044	bayes_pls_golite062009
catalytic activity	0.486907672100804	bayes_pls_golite062009
methyltransferase activity	0.155495931533276	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.145822362574272	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: