YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17986376, gi\|...
Organism:	Brucella melitensis bv. 1 str. 16M
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17986376, gi|....

Description	E-value	Query Range	Subject Range
gi\|254713613 - gi\|254713613\|ref\|ZP_05175424.1\| ATP:cobalamin adenosyltransferase [Brucella ceti M644/93/1] gi\|148370350, gi... - gi\|148559093\|ref\|YP_001259792.1\| putative ATP:cob(I)alamin adenosyltransferase [Brucella ovis ATCC 2... gi\|254716033 - gi\|254716033\|ref\|ZP_05177844.1\| ATP:cobalamin adenosyltransferase [Brucella ceti M13/05/1] gi\|23348847, gi\|... - gi\|23502823\|ref\|NP_698950.1\| ATP:cob(I)alamin adenosyltransferase, putative [Brucella suis 1330], gi... gi\|225853411, gi... - gi\|225853411\|ref\|YP_002733644.1\| ATP:cobalamin adenosyltransferase [Brucella melitensis ATCC 23457],... gi\|161619893, gi... - gi\|161619893\|ref\|YP_001593780.1\| ATP:cob(I)alamin adenosyltransferase [Brucella canis ATCC 23365], g... gi\|163843997, gi... - gi\|163843997\|ref\|YP_001628401.1\| ATP:cob(I)alamin adenosyltransferase [Brucella suis ATCC 23445], gi... gi\|254704983 - gi\|254704983\|ref\|ZP_05166811.1\| ATP:cobalamin adenosyltransferase [Brucella suis bv. 3 str. 686] gi\|254708958 - gi\|254708958\|ref\|ZP_05170769.1\| ATP:cobalamin adenosyltransferase [Brucella pinnipedialis B2/94] gi\|254694603 - gi\|254694603\|ref\|ZP_05156431.1\| ATP:cobalamin adenosyltransferase [Brucella abortus bv. 3 str. Tulya... gi\|254700613 - gi\|254700613\|ref\|ZP_05162441.1\| ATP:cobalamin adenosyltransferase [Brucella suis bv. 5 str. 513]	295.0	[0..15]	[207..1]
gi\|189020614, gi... - gi\|189025042\|ref\|YP_001935810.1\| Protein of unknown function DUF80 [Brucella abortus S19], gi\|189020... gi\|82700735 - gi\|82700735\|ref\|YP_415309.1\| hypothetical protein BAB1_1976 [Brucella melitensis biovar Abortus 2308... gi\|254731146 - gi\|254731146\|ref\|ZP_05189724.1\| hypothetical protein Babob42_08116 [Brucella abortus bv. 4 str. 292] gi\|82616836 - gi\|82616836\|emb\|CAJ11932.1\| Protein of unknown function DUF80 [Brucella melitensis biovar Abortus 23... gi\|62290823, gi\|... - gi\|62290823\|ref\|YP_222616.1\| ATP:cob(I)alamin adenosyltransferase [Brucella abortus bv. 1 str. 9-941... gi\|254707502 - gi\|254707502\|ref\|ZP_05169330.1\| hypothetical protein BpinM_11149 [Brucella pinnipedialis M163/99/10]	294.0	[0..15]	[207..1]
gi\|115258700, gi... - gi\|116254052\|ref\|YP_769890.1\| putative cobalamin adenosultransferase [Rhizobium leguminosarum bv. vi...	287.0	[0..15]	[206..1]
gi\|86283475, gi\|... - gi\|86359373\|ref\|YP_471265.1\| hypothetical protein RHE_CH03790 [Rhizobium etli CFN 42], gi\|86283475\|g...	284.0	[0..15]	[206..1]
gi\|15159734, gi\|... - gi\|15891347\|ref\|NP_357019.1\| hypothetical protein AGR_L_2467 [Agrobacterium tumefaciens str. C58], g... gi\|25345920 - pir\|\|B98285 hypothetical protein AGR_L_2467 [imported] - Agrobacterium tumefaciens (strain C58, Cere...	279.0	[0..12]	[206..2]
gi\|13473010, gi\|... - gi\|14023758\|dbj\|BAB50363.1\| mlr3485 [Mesorhizobium loti MAFF303099], gi\|13473010\|ref\|NP_104577.1\| hy...	277.0	[0..15]	[206..1]
gi\|15075665 - gi\|15075665\|emb\|CAC47220.1\| Conserved hypothetical protein, partial homology with a human cob(I)alam... gi\|15966394 - gi\|15966394\|ref\|NP_386747.1\| hypothetical protein SMc00731 [Sinorhizobium meliloti 1021]	275.0	[0..15]	[206..1]
gi\|113727198, gi... - gi\|150397728\|ref\|YP_001328195.1\| ATP--cobalamin adenosyltransferase [Sinorhizobium medicae WSM419], ...	274.0	[0..15]	[206..1]
gi\|89348820, gi\|... - gi\|89362440\|ref\|ZP_01200248.1\| Cobalamin adenosyltransferase [Xanthobacter autotrophicus Py2], gi\|89...	272.0	[0..15]	[207..1]

Back

Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSISRVMQ ADNKMVKLNK IYTRTGDKGT TGLASGPRRL KCDLRVEAYG TVDEANACVG  60
   61 MARIHTGAQD AHAEIDAMLA RIQNDLFDLG ADLSTPDDGQ PLSYEPLRIV ASQVSRVEAD 120
  121 IDRLNANLQP LRSFILPGGS PASAALHLAR TVSRRAERLM VALSRMEGEK VSPEALQYIN 180
  181 RLSDFLFVAG RAVNDNGASD ILWVPGAQSL SERGGSVLER VSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.154902
Match:	1rtyA
Description:	Crystal Structure of Bacillus subtilis YvqK, a putative ATP-binding Cobalamin Adenosyltransferase, The North East Structural Genomics Target SR128
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.609015643500883	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: