YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25520786, gi\|...
Organism:	Agrobacterium tumefaciens
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25520786, gi|....

Description	E-value	Query Range	Subject Range
gi\|62128468, gi\|... - gi\|62180835\|ref\|YP_217252.1\| periplasmic nitrate reductase [Salmonella enterica subsp. enterica sero...	112.0	[0..7]	[87..93]
gi\|112823693, gi... - gi\|113461650\|ref\|YP_719719.1\| periplasmic nitrate reductase chaperone NapD [Haemophilus somnus 129PT...	112.0	[0..5]	[86..74]
gi\|16263128, gi\|... - gi\|16263128\|ref\|NP_435921.1\| NapD component of periplasmic nitrate reductase [Sinorhizobium meliloti... gi\|46403686, gi\|... - gi\|46403686\|gb\|AAS92892.1\| hypothetical protein [Sinorhizobium meliloti], pir\|\|C95346 NapD component...	107.0	[0..1]	[95..1]
gi\|32527212, gi\|... - gi\|38637874\|ref\|NP_942848.1\| periplasmic nitrate reductase accessory protein [Cupriavidus necator], ... gi\|32527212, gi\|... - gi\|38637874\|ref\|NP_942848.1\| periplasmic nitrate reductase accessory protein [Ralstonia eutropha H16...	105.0	[0..3]	[93..14]
gi\|32028783 - gi\|32028783\|ref\|ZP_00131919.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	105.0	[0..5]	[86..36]
gi\|77958999 - gi\|77958999\|ref\|ZP_00823024.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	104.0	[0..6]	[86..4]
gi\|150031841, gi... - gi\|150377294\|ref\|YP_001313889.1\| NapD family protein [Sinorhizobium medicae WSM419], gi\|150031841\|gb...	102.0	[0..1]	[95..1]
gi\|77960880 - gi\|77960880\|ref\|ZP_00824734.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	102.0	[0..6]	[86..4]
gi\|28901053, gi\|... - gi\|28901053\|ref\|NP_800708.1\| NapD protein [Vibrio parahaemolyticus RIMD 2210633], gi\|28809566\|dbj\|BA... gi\|28809566 - gi\|28809566\|dbj\|BAC62541.1\| NapD protein [Vibrio parahaemolyticus RIMD 2210633] gi\|149749550, gi... - gi\|153837133\|ref\|ZP_01989800.1\| NapD protein [Vibrio parahaemolyticus AQ3810], gi\|149749550\|gb\|EDM60...	101.0	[0..7]	[92..5]
gi\|21958221, gi\|... - gi\|22125341\|ref\|NP_668764.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis KIM... gi\|45442438, gi\|... - gi\|45442438\|ref\|NP_993977.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis bio...	101.0	[0..7]	[86..7]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPENTGRYHV SSAVVAVMPQ MRDAVFATLL TLDNVEVHGE GNGKIVIVID GKSTGMLGDT  60
   61 LTYISTLDGV IAANMVFEHV DTEETGGDEQ RTDAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	2jsxA
Description:	No description for 2jsxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits