YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25352678, gi\|...
Organism:	Agrobacterium tumefaciens
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25352678, gi|....

Description	E-value	Query Range	Subject Range
gi\|78387357, gi\|... - gi\|90422135\|ref\|YP_530505.1\| HNH endonuclease [Rhodopseudomonas palustris BisB18], gi\|90104149\|gb\|AB...	258.0	[0..1]	[185..1]
gi\|77689950, gi\|... - gi\|91974822\|ref\|YP_567481.1\| HNH endonuclease [Rhodopseudomonas palustris BisB5], gi\|91681278\|gb\|ABE...	258.0	[0..1]	[185..1]
gi\|115516771, gi... - gi\|77742010\|ref\|ZP_00810490.1\| HNH endonuclease [Rhodopseudomonas palustris BisA53], gi\|77698036\|gb\|...	258.0	[0..1]	[185..1]
gi\|13473003, gi\|... - gi\|14023751\|dbj\|BAB50356.1\| mll3477 [Mesorhizobium loti MAFF303099], gi\|13473003\|ref\|NP_104570.1\| hy...	257.0	[0..1]	[185..1]
gi\|86747604, gi\|... - gi\|86747604\|ref\|YP_484100.1\| HNH endonuclease [Rhodopseudomonas palustris HaA2], gi\|86570632\|gb\|ABD0...	257.0	[0..1]	[185..1]
gi\|15075659 - gi\|15075659\|emb\|CAC47214.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15966388 - gi\|15966388\|ref\|NP_386741.1\| hypothetical protein SMc00737 [Sinorhizobium meliloti 1021]	257.0	[0..1]	[185..1]
gi\|68193392, gi\|... - gi\|69274952\|ref\|ZP_00610864.1\| HNH endonuclease [Mesorhizobium sp. BNC1], gi\|68193392\|gb\|EAN08044.1\|...	257.0	[0..1]	[185..1]
gi\|27376478, gi\|... - gi\|27376478\|ref\|NP_768007.1\| hypothetical protein bll1367 [Bradyrhizobium japonicum USDA 110], gi\|27...	257.0	[0..1]	[185..84]
gi\|192282737, gi... - gi\|192288988\|ref\|YP_001989593.1\| HNH endonuclease [Rhodopseudomonas palustris TIE-1], gi\|192282737\|g... RPA0556 - RPA0556 HNH endonuclease:HNH nuclease 617758:618315 reverse MW:21316	256.0	[0..1]	[185..1]
gi\|86283469, gi\|... - gi\|86359367\|ref\|YP_471259.1\| putative endonuclease protein [Rhizobium etli CFN 42], gi\|86283469\|gb\|A...	256.0	[0..1]	[185..1]

Back

Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIAVSPQAL PALVLNADYR PLSYYPLSLW SWQDAIKAVF LDRVNIIAEY DHAVSSPSFS  60
   61 MRLPSVVSL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [70-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTYVQPIRNP AFTRFNVFLR DKFECQYCGT RDELTFDHVI PRAHGGETTW HNVVAACSPC  60
   61 NLRKGSKLPK QAGMFPAQKP FQPTVQDLHN NGRLFPPNYL HESWMDYLYW DTELQP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	2qgpA
Description:	No description for 2qgpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits