YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25524240, gi\|...
Organism:	Agrobacterium tumefaciens
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25524240, gi|....

Description	E-value	Query Range	Subject Range
gi\|115258525, gi... - gi\|116253877\|ref\|YP_769715.1\| putative transmembrane transporter component [Rhizobium leguminosarum ...	162.0	[0..20]	[210..12]
gi\|73540400, gi\|... - gi\|73540400\|ref\|YP_294920.1\| tripartite ATP-independent periplasmic transporter DctQ [Ralstonia eutr...	160.0	[0..32]	[210..1]
gi\|27352011, gi\|... - gi\|27378862\|ref\|NP_770391.1\| hypothetical protein bll3751 [Bradyrhizobium japonicum USDA 110], gi\|27...	159.0	[0..32]	[210..1]
gi\|148254888, gi... - gi\|78695878\|ref\|ZP_00860389.1\| conserved hypothetical protein [Bradyrhizobium sp. BTAi1], gi\|7851644...	157.0	[0..32]	[210..1]
gi\|68554132, gi\|... - gi\|94311684\|ref\|YP_584894.1\| tripartite ATP-independent periplasmic transporter DctQ [Ralstonia meta...	156.0	[0..32]	[210..1]
gi\|75700833, gi\|... - gi\|75907108\|ref\|YP_321404.1\| tripartite ATP-independent periplasmic transporter DctQ [Anabaena varia...	154.0	[0..32]	[208..1]
gi\|16119498, gi\|... - gi\|17938855\|ref\|NP_535643.1\| permease component of C4 dicarboxylate transporter [Agrobacterium tumef... gi\|25522060 - pir\|\|AI3192 hypothetical protein Atu5270 [imported] - Agrobacterium tumefaciens (strain C58, Dupont)...	154.0	[0..3]	[201..11]
gi\|17132120, gi\|... - gi\|17230518\|ref\|NP_487066.1\| hypothetical protein alr3026 [Nostoc sp. PCC 7120], gi\|17132120\|dbj\|BAB... gi\|25359443 - pir\|\|AC2184 hypothetical protein alr3026 [imported] - Nostoc sp. (strain PCC 7120)	154.0	[0..32]	[207..1]
gi\|91799923, gi\|... - gi\|92117029\|ref\|YP_576758.1\| tripartite ATP-independent periplasmic transporter DctQ [Nitrobacter ha...	154.0	[0..32]	[210..1]
gi\|53735127, gi\|... - gi\|67922507\|ref\|ZP_00516016.1\| Tripartite ATP-independent periplasmic transporter, DctQ component [C...	153.0	[0..32]	[208..1]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVEARPPWG YRTLLSAINP QRARKREEGK VMKSLLKLSA LIDLVSEALG KVAGYLVLIC  60
   61 CLVSAGNAMV RYALNYSSNG WLEIQWYMFA FIVLIGASYT LRMNEHVRVD IIYGAISPRS 120
  121 RLWVDIIGIV LFLIPACFYL AWLSWPMFTL SWHQGEMSSN AGGLIRWPVK LVIFAGFALL 180
  181 VLQGFSELIK RVGALNGLYA LDTKYEKPLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.920819
Match:	PF04290.3
Description:	No description for PF04290.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits