YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16119498, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16119498, gi|....

Description	E-value	Query Range	Subject Range
gi\|55980163, gi\|... - gi\|55980163\|ref\|YP_143460.1\| tripartite transporter, small subunit [Thermus thermophilus HB8], gi\|55...	160.0	[0..41]	[218..1]
gi\|75700833, gi\|... - gi\|75907108\|ref\|YP_321404.1\| tripartite ATP-independent periplasmic transporter DctQ [Anabaena varia...	159.0	[0..41]	[222..1]
gi\|33599276, gi\|... - gi\|33599276\|ref\|NP_886836.1\| hypothetical protein BB0287 [Bordetella bronchiseptica RB50], gi\|335753...	159.0	[0..41]	[220..1]
gi\|33572227, gi\|... - gi\|33592581\|ref\|NP_880225.1\| hypothetical protein BP1488 [Bordetella pertussis Tohama I], gi\|3357222...	158.0	[0..41]	[220..1]
gi\|17132120, gi\|... - gi\|17230518\|ref\|NP_487066.1\| hypothetical protein alr3026 [Nostoc sp. PCC 7120], gi\|17132120\|dbj\|BAB... gi\|25359443 - pir\|\|AC2184 hypothetical protein alr3026 [imported] - Nostoc sp. (strain PCC 7120)	158.0	[0..41]	[222..1]
gi\|33594998 - gi\|33594998\|ref\|NP_882641.1\| hypothetical protein BPP0284 [Bordetella parapertussis 12822] gi\|33565074 - gi\|33565074\|emb\|CAE40025.1\| putative membrane protein [Bordetella parapertussis]	158.0	[0..41]	[220..1]
gi\|27352011, gi\|... - gi\|27378862\|ref\|NP_770391.1\| hypothetical protein bll3751 [Bradyrhizobium japonicum USDA 110], gi\|27...	156.0	[0..41]	[215..1]
gi\|73540400, gi\|... - gi\|73540400\|ref\|YP_294920.1\| tripartite ATP-independent periplasmic transporter DctQ [Ralstonia eutr...	155.0	[0..41]	[206..1]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEEFHRHRP LSVKPPLISC PNYSGSMCIE EYAAASGEDI MKFLLAVSRA IDAANSAIGK  60
   61 CISWLLLAAI FISAINAAMR KAFSMSSNAW LESQWYLFSA VFLIAAAYTL LNNEHVKVDL 120
  121 IYGGLPRKGQ LWVDILGTIF FLMPFCLITV YLSWPVFLQK FASGEVSNNT GGLIQWPVWA 180
  181 LIPIGFTLLS LQGVSELIKR VAILRGDIPD PVAAADAEAA ML

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.585027
Match:	PF04290.3
Description:	No description for PF04290.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits