YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25521688
Organism:	Agrobacterium tumefaciens
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25521688.

Description	E-value	Query Range	Subject Range
gi\|47553328, gi\|... - gi\|47569980\|ref\|ZP_00240643.1\| nitroreductase family protein [Bacillus cereus G9241], gi\|47553328\|gb...	174.0	[0..81]	[275..4]
gi\|42737025, gi\|... - gi\|42781104\|ref\|NP_978351.1\| hypothetical protein BCE_2035 [Bacillus cereus ATCC 10987], gi\|42737025...	174.0	[0..81]	[275..4]
gi\|49332113, gi\|... - gi\|49480557\|ref\|YP_036117.1\| nitroreductase family protein [Bacillus thuringiensis serovar konkukian...	172.0	[0..81]	[275..4]
gi\|165870227, gi... - gi\|165870227\|ref\|ZP_02214883.1\| conserved hypothetical protein [Bacillus anthracis str. A0488], gi\|1... gi\|227005446, gi... - gi\|227815229\|ref\|YP_002815238.1\| hypothetical protein BAMEG_2640 [Bacillus anthracis str. CDC 684], ... gi\|167531945, gi... - gi\|167633133\|ref\|ZP_02391459.1\| conserved hypothetical protein [Bacillus anthracis str. A0442], gi\|1... gi\|229602608, gi... - gi\|229602608\|ref\|YP_002866354.1\| hypothetical protein BAA_2020 [Bacillus anthracis str. A0248], gi\|2... gi\|170129051, gi... - gi\|170706049\|ref\|ZP_02896511.1\| conserved hypothetical protein [Bacillus anthracis str. A0389], gi\|1... gi\|172083391, gi... - gi\|177650930\|ref\|ZP_02933827.1\| conserved hypothetical protein [Bacillus anthracis str. A0174], gi\|1... gi\|167638423, gi... - gi\|167638423\|ref\|ZP_02396700.1\| conserved hypothetical protein [Bacillus anthracis str. A0193], gi\|1... gi\|170686612, gi... - gi\|170686612\|ref\|ZP_02877833.1\| conserved hypothetical protein [Bacillus anthracis str. A0465], gi\|1... gi\|190566381, gi... - gi\|190566381\|ref\|ZP_03019299.1\| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I], ... gi\|65319266 - gi\|65319266\|ref\|ZP_00392225.1\| COG3560: Predicted oxidoreductase related to nitroreductase [Bacillus...	172.0	[0..76]	[275..1]
gi\|254755504 - gi\|254755504\|ref\|ZP_05207538.1\| hypothetical protein BantV_23792 [Bacillus anthracis str. Vollum] gi\|254760040 - gi\|254760040\|ref\|ZP_05212064.1\| hypothetical protein BantA9_17151 [Bacillus anthracis str. Australia... gi\|254734849 - gi\|254734849\|ref\|ZP_05192561.1\| hypothetical protein BantWNA_06730 [Bacillus anthracis str. Western ... gi\|254741250 - gi\|254741250\|ref\|ZP_05198938.1\| hypothetical protein BantKB_09617 [Bacillus anthracis str. Kruger B] gi\|21399828 - ref\|NP_655813.1\| Nitroreductase, Nitroreductase family [Bacillus anthracis str. A2012] gi\|49178750, gi\|... - gi\|49184823\|ref\|YP_028075.1\| hypothetical protein BAS1811 [Bacillus anthracis str. Sterne], gi\|49178... gi\|47502394, gi\|... - gi\|47527246\|ref\|YP_018595.1\| hypothetical protein GBAA1951 [Bacillus anthracis str. 'Ames Ancestor']... gi\|30256609, gi\|... - gi\|30261983\|ref\|NP_844360.1\| hypothetical protein BA1951 [Bacillus anthracis str. Ames], gi\|30256609... gi\|254684546 - gi\|254684546\|ref\|ZP_05148406.1\| hypothetical protein BantC_11905 [Bacillus anthracis str. CNEVA-9066... gi\|254721304 - gi\|254721304\|ref\|ZP_05183094.1\| hypothetical protein BantA1_02450 [Bacillus anthracis str. A1055]	172.0	[0..81]	[275..4]
gi\|51976935, gi\|... - gi\|52143466\|ref\|YP_083363.1\| nitroreductase family protein [Bacillus cereus E33L], gi\|51976935\|gb\|AA...	172.0	[0..81]	[275..4]
gi\|29895641, gi\|... - gi\|30020091\|ref\|NP_831722.1\| nitroreductase family protein [Bacillus cereus ATCC 14579], gi\|29895641...	170.0	[0..76]	[275..1]
gi\|25335016 - pir\|\|C97307 nitroreductase family protein [imported] - Clostridium acetobutylicum gi\|15896557, gi\|... - gi\|15896557\|ref\|NP_349906.1\| nitroreductase family protein [Clostridium acetobutylicum ATCC 824], gi...	170.0	[0..81]	[275..4]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRHYDRLWE GRWPSASEFC RISRPNFIHA VRACRVVRNS ATTGFALTGY CVGDPGLMLV  60
   61 LTENQEIELE LPNEKSASRI MVAQLLAKRR TQYSLGKNIV LPDEEIDALI REAVRLSPSA 120
  121 FNSQSSRVVI LHRDENQKLW DIVKSELSHI VEGEAKKHSF RKIDSFAAGA GAVLFFEDRN 180
  181 VIRILQDQWP LYADHFPDWS EQASGMAQLS VWIALAGIGI GASLQHYNPL VDAKIKRHWN 240
  241 IPDTWRLRAQ MPFGSNEAPF PPKTIISDGD RFRSFFR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	1ywqA
Description:	Crystal structure of a nitroreductase family protein from Bacillus cereus ATCC 14579
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.88351700678	bayes_pls_golite062009
NAD(P)H nitroreductase activity	1.73743442947569	bayes_pls_golite062009
catalytic activity	1.11149969304282	bayes_pls_golite062009
protein binding	0.385179389448981	bayes_pls_golite062009
oxidoreductase activity	0.27929339949687	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: