YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16804556
Organism:	Listeria monocytogenes EGD-e
Length:	352 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16804556.

Description	E-value	Query Range	Subject Range
gi\|254932240, gi... - gi\|254932240\|ref\|ZP_05265599.1\| transcriptional regulator LytR [Listeria monocytogenes HPB2262], gi\|... gi\|254825359 - gi\|254825359\|ref\|ZP_05230360.1\| transcriptional regulator LytR [Listeria monocytogenes FSL J1-194] gi\|225877528, gi... - gi\|226225066\|ref\|YP_002759173.1\| transcriptional regulator LytR [Listeria monocytogenes Clip81459], ... gi\|46908690, gi\|... - gi\|46908690\|ref\|YP_015079.1\| transcriptional regulator, putative [Listeria monocytogenes str. 4b F23... gi\|47017914, gi\|... - gi\|47093720\|ref\|ZP_00231472.1\| transcriptional regulator, putative [Listeria monocytogenes str. 4b H...	407.0	[0..1]	[352..1]
gi\|25328890, gi\|... - pir\|\|AH1764 B. subtilis probable transcription regulator LytR homolog lin2662 [imported] - Listeria ... gi\|16801723 - gi\|16801723\|ref\|NP_471991.1\| hypothetical protein lin2662 [Listeria innocua Clip11262]	396.0	[0..1]	[349..1]
gi\|228651924, gi... - gi\|229131545\|ref\|ZP_04260432.1\| Transcriptional regulator, LytR [Bacillus cereus BDRD-ST196], gi\|228... gi\|228751165, gi... - gi\|229010032\|ref\|ZP_04167246.1\| Transcriptional regulator, LytR [Bacillus mycoides DSM 2048], gi\|228... gi\|163860726, gi... - gi\|89205970\|ref\|ZP_01184534.1\| Cell envelope-related transcriptional attenuator [Bacillus weihenstep...	329.0	[0..1]	[334..2]
gi\|152023106, gi... - gi\|89201538\|ref\|ZP_01180277.1\| Cell envelope-related transcriptional attenuator [Bacillus cereus sub...	324.0	[0..1]	[333..1]
gi\|228899292, gi... - gi\|228899292\|ref\|ZP_04063555.1\| Transcriptional regulator, LytR [Bacillus thuringiensis IBL 4222], g... gi\|74490623, gi\|... - gi\|75761889\|ref\|ZP_00741815.1\| Transcriptional regulator, LytR family [Bacillus thuringiensis serova...	324.0	[0..1]	[334..20]
gi\|42740360, gi\|... - gi\|42784428\|ref\|NP_981675.1\| membrane-bound transcriptional regulator LytR [Bacillus cereus ATCC 109...	323.0	[0..18]	[332..2]
gi\|116103968, gi... - gi\|62513662\|ref\|ZP_00385197.1\| COG1316: Transcriptional regulator [Lactobacillus casei ATCC 334], gi... gi\|190711371, gi... - gi\|191637069\|ref\|YP_001986235.1\| Transcriptional regulator [Lactobacillus casei BL23], gi\|190711371\|...	321.0	[0..2]	[349..3]
gi\|56381701, gi\|... - gi\|56421859\|ref\|YP_149177.1\| membrane-bound transcriptional regulator LytR [Geobacillus kaustophilus...	319.0	[0..10]	[333..1]
gi\|47569370, gi\|... - gi\|47569370\|ref\|ZP_00240053.1\| transcriptional regulator [Bacillus cereus G9241], gi\|47553958\|gb\|EAL...	319.0	[0..18]	[332..2]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKGTDDSRR SSKKYKRRRK ILFWILIPVM CLVLAGVGYG TYLFSKTKLA ADNSYDNVRN  60
   61 GKASTLRTND IEPIKDSFSI LIIGVDTSST RAENGNPRSD SLILATF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVKDSRVEMT SIPRDSYVHI EDSAKDIDKY TKINAAHAYG GPELTMKTVE EEFKIPIDYY  60
   61 VRFDFDAFLK IVDALDGIDV DVPVDFTEQD SKDNAGAITL KKGPQHLNAE QALALARTRH 120
  121 IDSDIERGKR QQLIIKSIVS EATSISSVSK YSDIIEVVGD NMKTNLTFNQ MLSIAK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	65.19382
Match:	PF03816.3
Description:	No description for PF03816.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [284-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGMTNKIDIK SLNLKGDSNP MDGIYYYKLD ESSVQSISNE FADELGIKQP FPGAAPYSDE  60
   61 SSSTTSSSN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.622	N/A	N/A	d.58.4	Dimeric alpha+beta barrel
View	Download	0.618	N/A	N/A	d.12.1	Ribosomal proteins L23 and L15e
View	Download	0.581	N/A	N/A	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.574	N/A	N/A	d.12.1	Ribosomal proteins L23 and L15e
View	Download	0.564	N/A	N/A	d.64.1	eIF1-like
View	Download	0.556	N/A	N/A	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.528	N/A	N/A	d.64.1	eIF1-like
View	Download	0.486	N/A	N/A	d.58.4	Dimeric alpha+beta barrel

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits