YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25303439, gi\|...
Organism:	Listeria monocytogenes
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25303439, gi|....

Description	E-value	Query Range	Subject Range
gi\|16801721 - gi\|16801721\|ref\|NP_471989.1\| hypothetical protein lin2660 [Listeria innocua Clip11262] gi\|25303440, gi\|... - pir\|\|AF1764 conserved hypothetical protein homolog lin2660 [imported] - Listeria innocua (strain Cli...	256.0	[0..1]	[211..1]
gi\|46908688, gi\|... - gi\|46908688\|ref\|YP_015077.1\| hypothetical protein LMOf2365_2489 [Listeria monocytogenes str. 4b F236... gi\|225877526, gi... - gi\|226225064\|ref\|YP_002759171.1\| hypothetical protein Lm4b_02485 [Listeria monocytogenes Clip81459],... gi\|254993055 - gi\|254993055\|ref\|ZP_05275245.1\| hypothetical protein LmonocytoFSL_08461 [Listeria monocytogenes FSL ... gi\|254879158 - gi\|254879158\|ref\|ZP_05251868.1\| hypothetical protein LmonFSL_08177 [Listeria monocytogenes FSL J2-07... gi\|254853955 - gi\|254853955\|ref\|ZP_05243303.1\| hypothetical protein LmonoFSL_11884 [Listeria monocytogenes FSL R2-5... gi\|254825361 - gi\|254825361\|ref\|ZP_05230362.1\| hypothetical protein LmonFS_09362 [Listeria monocytogenes FSL J1-194... gi\|153168622, gi... - gi\|153168622\|ref\|ZP_01928445.1\| conserved hypothetical protein [Listeria monocytogenes FSL N1-017], ... gi\|254932242, gi... - gi\|254932242\|ref\|ZP_05265601.1\| hypothetical protein LmonH_07419 [Listeria monocytogenes HPB2262], g...	254.0	[0..1]	[211..1]
gi\|228855938, gi... - gi\|228903670\|ref\|ZP_04067790.1\| IMPACT family member yvyE [Bacillus thuringiensis IBL 4222], gi\|2288... gi\|228848687, gi... - gi\|228911032\|ref\|ZP_04074840.1\| IMPACT family member yvyE [Bacillus thuringiensis IBL 200], gi\|22884... gi\|228961435, gi... - gi\|228961435\|ref\|ZP_04123048.1\| IMPACT family member yvyE [Bacillus thuringiensis serovar pakistani ... gi\|75759037, gi\|... - gi\|75759037\|ref\|ZP_00739145.1\| Hypothetical protein RBTH_03569 [Bacillus thuringiensis serovar israe... gi\|228791389, gi... - gi\|228968312\|ref\|ZP_04129309.1\| IMPACT family member yvyE [Bacillus thuringiensis serovar sotto str.... gi\|228722515, gi... - gi\|229050859\|ref\|ZP_04194411.1\| IMPACT family member yvyE [Bacillus cereus AH676], gi\|228722515\|gb\|E... gi\|228670986, gi... - gi\|229112606\|ref\|ZP_04242143.1\| IMPACT family member yvyE [Bacillus cereus Rock1-15], gi\|228670986\|g... gi\|228652783, gi... - gi\|229130444\|ref\|ZP_04259400.1\| IMPACT family member yvyE [Bacillus cereus BDRD-Cer4], gi\|228652783\|... gi\|229147728, gi... - gi\|229147728\|ref\|ZP_04276071.1\| IMPACT family member yvyE [Bacillus cereus BDRD-ST24], gi\|228635741\|... gi\|218161230, gi... - gi\|218233273\|ref\|YP_002369973.1\| conserved hypothetical protein TIGR00257 [Bacillus cereus B4264], g... gi\|30023232, gi\|... - gi\|30023232\|ref\|NP_834863.1\| Xaa-Pro dipeptidase [Bacillus cereus ATCC 14579], gi\|29898792\|gb\|AAP120...	243.0	[0..1]	[210..1]
gi\|152977406, gi... - gi\|89201180\|ref\|ZP_01179926.1\| Protein of unknown function UPF0029 [Bacillus cereus subsp. cytotoxis...	241.0	[0..1]	[210..1]
gi\|163942881, gi... - gi\|89205062\|ref\|ZP_01183635.1\| Protein of unknown function UPF0029 [Bacillus weihenstephanensis KBAB...	241.0	[0..1]	[207..1]
gi\|29376318, gi\|... - gi\|29376318\|ref\|NP_815472.1\| hypothetical protein EF1771 [Enterococcus faecalis V583], gi\|29343781\|g...	241.0	[0..1]	[209..1]
gi\|56964852, gi\|... - gi\|56964852\|ref\|YP_176583.1\| hypothetical protein ABC3088 [Bacillus clausii KSM-K16], gi\|56911095\|db...	240.0	[0..1]	[210..1]
gi\|25303432 - pir\|\|F84103 hypothetical protein BH3630 [imported] - Bacillus halodurans (strain C-125) gi\|10176254, gi\|... - gi\|15616192\|ref\|NP_244497.1\| hypothetical protein BH3630 [Bacillus halodurans C-125], gi\|10176254\|db...	240.0	[0..1]	[210..1]
gi\|56381529, gi\|... - gi\|56421687\|ref\|YP_149005.1\| hypothetical protein GK3152 [Geobacillus kaustophilus HTA426], gi\|56381...	240.0	[0..1]	[207..1]
gi\|47568480, gi\|... - gi\|47569304\|ref\|ZP_00239989.1\| conserved hypothetical protein protein TIGR00257 [Bacillus cereus G92... gi\|228936483, gi... - gi\|228936483\|ref\|ZP_04099281.1\| IMPACT family member yvyE [Bacillus thuringiensis serovar andalousie... gi\|196039518, gi... - gi\|196039518\|ref\|ZP_03106823.1\| conserved hypothetical protein TIGR00257 [Bacillus cereus NVH0597-99...	240.0	[0..1]	[210..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDHYLTIHS DGKHEIIIEK SRFICHIKRA TTETEAQTFI QEIKKEHRDA THNCSAYIIG  60
   61 ENDQYQKAHD DGEPSGTAGF PMLEILKKKS LKNVAVVVTR YFGGTKLGAG GLVRAYGSAV 120
  121 SEAIQAIGIV ECKLATIVEC SFAYPLLGKV ENALELKAYQ IDKKEFTEKV VLHIFVDNDE 180
  181 LQDFFNWITE ISNGQLEYKE GPQKYREKDV T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	2cveA
Description:	Crystal structure of a conserved hypothetical protein TT1547 from thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.112026646106867	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: